YRC Public Data Repository - Protein Structure Prediction

Protein:	DPOD4_MOUSE
Organism:	Mus musculus
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPOD4_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|61557254, gi\|... - gi\|61557254\|ref\|NP_001013213.1\| DNA-directed DNA polymerase delta 4 [Rattus norvegicus], gi\|38303877...	185.0	[0..1]	[107..1]
gi\|73983609 - gi\|73983609\|ref\|XP_854661.1\| PREDICTED: similar to DNA polymerase delta subunit 4 (DNA polymerase de...	172.0	[0..1]	[107..1]
DPOD4_BOVIN - DNA polymerase delta subunit 4 OS=Bos taurus GN=POLD4 PE=1 SV=1	170.0	[0..1]	[107..1]
POLD4 - polymerase (DNA-directed), delta 4 gi\|114638849 - gi\|114638849\|ref\|XP_001173013.1\| PREDICTED: polymerase (DNA-directed), delta 4 isoform 2 [Pan troglo...	167.0	[0..1]	[107..1]
gi\|47271454, gi\|... - gi\|47271454\|ref\|NP_066996.2\| DNA-directed DNA polymerase delta 4 [Homo sapiens], gi\|47125378\|gb\|AAH7...	166.0	[0..1]	[107..1]
gi\|109105222 - gi\|109105222\|ref\|XP_001107074.1\| PREDICTED: polymerase (DNA-directed), delta 4 [Macaca mulatta]	165.0	[0..1]	[107..1]
gi\|42551299, gi\|... - gi\|46123309\|ref\|XP_386208.1\| hypothetical protein FG06032.1 [Gibberella zeae PH-1], gi\|42551299\|gb\|E...	132.0	[0..7]	[104..64]
gi\|21594051 - gi\|21594051\|gb\|AAM65969.1\| unknown [Arabidopsis thaliana]	124.0	[0..10]	[90..30]

Back

Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRKRFITDS YPVVKKREGP PGHSKGELAP ELGEDTQSLS QEETELELLR QFDLAWQYGP  60
   61 CTGITRLQRW SRAEQMGLKP PLEVYQVLKA HPEDPHFQCS LWHLYPL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	52.886057
Match:	PF04081.4
Description:	No description for PF04081.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits