YRC Public Data Repository - Protein Structure Prediction

Protein:	TWSG1_MOUSE
Organism:	Mus musculus
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TWSG1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|13436044 - gi\|13436044\|gb\|AAH04850.1\| Twisted gastrulation homolog 1 (Drosophila) [Mus musculus]	345.0	[0..1]	[222..1]
TWSG1 - twisted gastrulation homolog 1 (Drosophila)	344.0	[0..1]	[222..1]
gi\|109121565 - gi\|109121565\|ref\|XP_001099214.1\| PREDICTED: similar to twisted gastrulation [Macaca mulatta] gi\|90079225 - gi\|90079225\|dbj\|BAE89292.1\| unnamed protein product [Macaca fascicularis] gi\|114672282 - gi\|114672282\|ref\|XP_001138675.1\| PREDICTED: twisted gastrulation [Pan troglodytes]	344.0	[0..1]	[222..1]
gi\|149037370, gi... - gi\|34877944\|ref\|XP_343638.1\| PREDICTED: similar to twisted gastrulation homolog 1 [Rattus norvegicus...	342.0	[0..1]	[222..1]
gi\|73962202 - gi\|73962202\|ref\|XP_547668.2\| PREDICTED: similar to twisted gastrulation [Canis familiaris]	341.0	[0..1]	[222..1]
TWSG1_PONAB - Twisted gastrulation protein homolog 1 OS=Pongo abelii GN=TWSG1 PE=2 SV=1 TWSG1_PONPY - Twisted gastrulation protein homolog 1 precursor - Pongo pygmaeus (Orangutan)	341.0	[0..1]	[222..1]
gi\|115497310, gi... - gi\|76651994\|ref\|XP_617448.2\| PREDICTED: similar to twisted gastrulation [Bos taurus], gi\|115497310\|r...	339.0	[0..3]	[222..4]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSHYIVLAL ASLTFLLCLP VSQSCNKALC ASDVSKCLIQ ELCQCRPGEG NCPCCKECML  60
   61 CLGALWDECC DCVGMCNPRN YS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [83-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTPPTSKSTV EELHEPIPSL FRALTEGDTQ LNWNIVSFPV AEELSHHENL VSFLETVNQL  60
   61 HHQNVSVPSN NVHAPFPSDK ERMCTVVYFD DCMSIHQCKI SCESMGASKY RWFHNACCEC 120
  121 IGPECIDYGS KTVKCMNCMF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	107.585027
Match:	PF04668.3
Description:	No description for PF04668.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.295	0.546	mesoderm formation	c.37.1	P-loop containing nucleoside triphosphate hydrolases

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits