YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUB8_MOUSE
Organism:	Mus musculus
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUB8_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|187469737, gi... - gi\|62642368\|ref\|XP_215269.3\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	310.0	[0..1]	[186..1]
NDUB8_BOVIN - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Bos taurus GN=NDUFB8 P...	304.0	[0..1]	[186..1]
gi\|124000217, gi... - gi\|124000217\|gb\|ABM87617.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa [synthetic c... NDUFB8 - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa	302.0	[0..1]	[186..1]
NDUB8_PANTR - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Pan troglodytes GN=NDU...	301.0	[0..1]	[186..1]
NDUB8_PONPY - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial precursor - Pongo pygmaeu... NDUB8_PONAB - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Pongo abelii GN=NDUFB8...	299.0	[0..1]	[186..1]
gi\|12845434 - gi\|12845434\|dbj\|BAB26749.1\| unnamed protein product [Mus musculus]	299.0	[0..9]	[186..9]
NDUB8_GORGO - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Gorilla gorilla gorill... gi\|111662041 - gi\|111662041\|gb\|ABH12197.1\| mitochondrial complex I subunit NDUFB8 [Gorilla gorilla]	298.0	[0..1]	[186..1]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAARAAALG VRWLQRTTRG VVPLEARRAF HMTKDMLPGS YPRTPEERAA AAKKYNMRVE  60
   61 DYEPYPDDGM GYGDYPMLPN RSQHERDPWY QWDHSELRMN WGEPIHWDLD MYIRNRVDTS 120
  121 PTPVSWDVMC KHLFGFVAFM VFMFWVGHVF PSYQPVGPKQ YPYNNLYLER GGDPTKEPEP 180
  181 VVHYDI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	113.769551
Match:	PF05821.2
Description:	No description for PF05821.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.217	N/A	N/A	d.110.3	PYP-like sensor domain (PAS domain)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits