YRC Public Data Repository - Protein Structure Prediction

Protein:	PP25_MOUSE, HSB1...
Organism:	Mus musculus
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PP25_MOUSE, HSB1....

Description	E-value	Query Range	Subject Range
gi\|114556694, gi... - gi\|55587102\|ref\|XP_513418.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi\|1145566...	155.0	[0..1]	[142..1]
gi\|109004905 - gi\|109004905\|ref\|XP_001113060.1\| PREDICTED: chromosome 1 open reading frame 41 [Macaca mulatta]	155.0	[0..1]	[142..1]
gi\|115497322, gi... - gi\|115497322\|ref\|NP_001069880.1\| chromosome 1 open reading frame 41 [Bos taurus], gi\|109659249\|gb\|AA...	154.0	[0..1]	[142..1]
HSPB11 - heat shock protein family B (small), member 11	154.0	[0..1]	[142..1]
gi\|149035757, gi... - gi\|196114870\|ref\|NP_001124474.1\| heat shock protein family B (small), member 11 [Rattus norvegicus],...	152.0	[0..1]	[143..1]
IFT25_MOUSE - Intraflagellar transport protein 25 homolog OS=Mus musculus GN=Hspb11 PE=1 SV=2	150.0	[0..1]	[143..1]
gi\|50751634 - gi\|50751634\|ref\|XP_422488.1\| PREDICTED: similar to C1orf41 protein [Gallus gallus]	144.0	[0..1]	[141..1]
gi\|145411092, gi... - gi\|82500950\|ref\|ZP_00886336.1\| hypothetical protein CsacDRAFT_0463 [Caldicellulosiruptor saccharolyt...	139.0	[0..3]	[135..501]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKVDLCSVT EGTEVILATS SDEKHPPENI IDGNPETFWT TTGMFPQEFI ICFHKHVKIE  60
   61 KLVIQSYLVR TLRTEKTTSK EPLDFEQWVE KDLVHTEGQL QNEEIVARDG YATFLRFIIV 120
  121 SAFDHFASVH SISAEGLTVS SLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	1tvgA
Description:	X-ray structure of human PP25 gene product, HSPC034. Northeast Structural Genomics Target HR1958.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits