YRC Public Data Repository - Protein Structure Prediction

Protein:	CKLF5_MOUSE
Organism:	Mus musculus
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CKLF5_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|149063937, gi... - gi\|27700030\|ref\|XP_214187.1\| PREDICTED: similar to chemokine-like factor superfamily 5 [Rattus norve...	153.0	[0..1]	[156..1]
gi\|115495609, gi... - gi\|76626948\|ref\|XP_587252.2\| PREDICTED: similar to chemokine-like factor superfamily 5 [Bos taurus],...	152.0	[0..1]	[156..1]
gi\|119586562, gi... - gi\|25137565\|gb\|AAN73040.1\|AF479262_1 chemokine-like factor super family member 5 transcript variant ...	152.0	[0..1]	[156..1]
gi\|73962633 - gi\|73962633\|ref\|XP_850232.1\| PREDICTED: similar to chemokine-like factor superfamily 5 isoform a [Ca...	149.0	[0..1]	[156..1]
gi\|114662992 - gi\|114662992\|ref\|XP_523385.2\| PREDICTED: chemokine-like factor superfamily 4 isoform 2 [Pan troglody...	140.0	[0..1]	[146..19]
CKLF4_MOUSE - CKLF-like MARVEL transmembrane domain-containing protein 4 OS=Mus musculus GN=Cmtm4 PE=1 SV=1	137.0	[0..1]	[146..19]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSAWDRRER PPEEGAAAGL QGFGVDKTFL SSLKGILLET ELALTFIIFI CFTASISAYM  60
   61 AAALLEFLIT LAFLFLCATQ YYQRFDRLNW PCLDFLRCLS AIVIFLVVSF AAVTSREGAA 120
  121 IAAFVFGIIL VSVFAYDAFK IYRTELMPST TEGDQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.113509
Match:	PF01284.14
Description:	No description for PF01284.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits