YRC Public Data Repository - Protein Structure Prediction

Protein:	RYBP_MOUSE
Organism:	Mus musculus
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RYBP_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|94399955 - gi\|94399955\|ref\|XP_001003112.1\| PREDICTED: similar to YY1-associated factor 2 [Mus musculus]	260.0	[0..12]	[227..59]
gi\|109474009 - gi\|109474009\|ref\|XP_001077629.1\| PREDICTED: similar to RING1 and YY1 binding protein [Rattus norvegi...	254.0	[0..11]	[228..262]
gi\|109036678 - gi\|109036678\|ref\|XP_001083085.1\| PREDICTED: similar to RING1 and YY1 binding protein [Macaca mulatta...	249.0	[0..11]	[228..268]
gi\|114587900 - gi\|114587900\|ref\|XP_516581.2\| PREDICTED: hypothetical protein [Pan troglodytes]	246.0	[0..11]	[228..409]
gi\|73985065 - gi\|73985065\|ref\|XP_541805.2\| PREDICTED: similar to RING1 and YY1 binding protein [Canis familiaris]	245.0	[0..11]	[228..96]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMGDKKSPT RPKRQAKPAA DEGFWDCSVC TFRNSAEAFK CSICDVRKGT STRKPRINSQ  60
   61 LVAQQVAQQY ATPPPPKKEK KEKVEKPDKE KPEKDKDISP SVTKKNTNKK TKPKSDILKD 120
  121 PPSEAN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIQSANATTK TSETNHTSRP RLKNVDRSTA QQLAVTVGNV TVIITDFKEK TRSSSTSSST  60
   61 VTSSAGSEQQ NQSSSGSEST DKGSSRSSTP KGDMSAVNDE SF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits