YRC Public Data Repository - Protein Structure Prediction

Protein:	TC1D1_MOUSE
Organism:	Mus musculus
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TC1D1_MOUSE.

Description	E-value	Query Range	Subject Range
TC1D3_MOUSE - Tctex1 domain-containing protein 3 OS=Mus musculus GN=Tcte3 PE=1 SV=2	224.0	[0..2]	[173..13]
gi\|34854128 - gi\|34854128\|ref\|XP_344847.1\| PREDICTED: similar to t-complex-associated testis expressed 3 isoform 1...	213.0	[0..3]	[173..14]
gi\|109073345 - gi\|109073345\|ref\|XP_001084185.1\| PREDICTED: similar to t-complex-associated-testis-expressed 3 [Maca...	203.0	[0..4]	[173..20]
gi\|73974041 - gi\|73974041\|ref\|XP_532273.2\| PREDICTED: similar to t-complex-associated-testis-expressed 3 [Canis fa...	203.0	[0..13]	[173..26]
TCTE3 - t-complex-associated-testis-expressed 3	201.0	[0..6]	[173..22]
gi\|114610289 - gi\|114610289\|ref\|XP_001138699.1\| PREDICTED: t-complex-associated-testis-expressed 3 [Pan troglodytes...	199.0	[0..6]	[173..22]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQTHGSKQQ AQRLEQGAES LRHGAQAQSR ENNVSLSTVS HADEPSQRDE SSRLTVRMEN  60
   61 TYQLGPTKPF PVATVNHILE DVLTTYLQEA QYDPEFCRQM TKTISEVIKT QVKELVIPRY 120
  121 KLIVIVYIGQ RDDQSIVIGS RCLWNPKSDT VSSYTFKNST FFALANVYAV YFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.30103
Match:	1ygtA
Description:	Dynein Light Chain TcTex-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits