YRC Public Data Repository - Protein Structure Prediction

Protein:	DERM_MOUSE
Organism:	Mus musculus
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DERM_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|1082328, gi\|3... - gi\|311614\|emb\|CAA80487.1\| dermatopontin [Homo sapiens], pir\|\|A47220 dermatopontin precursor - human	354.0	[0..1]	[201..1]
gi\|57089441 - gi\|57089441\|ref\|XP_547476.1\| PREDICTED: similar to Dermatopontin precursor (Tyrosine-rich acidic mat...	351.0	[0..1]	[201..1]
gi\|187469804, gi... - gi\|27677818\|ref\|XP_213925.1\| PREDICTED: similar to Dermatopontin precursor (Tyrosine-rich acidic mat...	324.0	[0..13]	[201..13]
gi\|114565226 - gi\|114565226\|ref\|XP_001134867.1\| PREDICTED: dermatopontin isoform 1 [Pan troglodytes]	321.0	[0..13]	[201..13]
DERM_BOVIN - Dermatopontin OS=Bos taurus GN=DPT PE=1 SV=3	320.0	[0..16]	[201..16]
gi\|12860280 - gi\|12860280\|dbj\|BAB31905.1\| unnamed protein product [Mus musculus]	291.0	[0..15]	[201..15]
gi\|51980570 - gi\|51980570\|gb\|AAH82221.1\| LOC494636 protein [Xenopus laevis]	271.0	[0..3]	[200..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLTLLWVLL PLVTTAWGQY GGYGYPYQQY QDYGDDGWVN LNRQGFSYQC PHGQVVVAVR  60
   61 SIFSKKEGSD RQWNYACMPT PQSLGEPTEC WWEEINRAGM EWYQKCSNNG LVAGFQSRYF 120
  121 ESVLDREWQF YCCRYSKRCP YSCWMTTEYP SHYGEDMDMI SYDYDFYMRG ATTTFSAVER 180
  181 DRQWKFIMCR MTDYDCEFEN V

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits