YRC Public Data Repository - Protein Structure Prediction

Protein:	GAPT_MOUSE
Organism:	Mus musculus
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAPT_MOUSE.

Description	E-value	Query Range	Subject Range
GAPT - GRB2-binding adaptor protein, transmembrane	302.0	[0..11]	[155..11]
gi\|114600152 - gi\|114600152\|ref\|XP_001139357.1\| PREDICTED: hypothetical protein [Pan troglodytes]	300.0	[0..11]	[155..11]
gi\|109077309 - gi\|109077309\|ref\|XP_001102973.1\| PREDICTED: hypothetical protein [Macaca mulatta]	288.0	[0..1]	[155..1]
gi\|157823571, gi... - gi\|157823571\|ref\|NP_001102961.1\| Grb2-binding adaptor protein, transmembrane [Rattus norvegicus], gi...	252.0	[0..1]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLECFESSPV AVAVGVSLLV LLLLCGIGCA WHWNRRESTP FTLPKFMQRR SSRQKDVTKT  60
   61 VSSSAYVISP SMKASVESKG HKSTAKRNKM HGNYENVEVC PPCTEGTTEK ALYENTQPSN 120
  121 LEEHVYGNQT DPLYYNFQKP SPPPPQDDDI YILPDCD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits