YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30017347, gi\|...
Organism:	Mus musculus
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30017347, gi|....

Description	E-value	Query Range	Subject Range
BL1S5_MOUSE - Biogenesis of lysosome-related organelles complex 1 subunit 5 OS=Mus musculus GN=Bloc1s5 PE=1 SV=1	244.0	[0..1]	[130..1]
BL1S5_RAT - Biogenesis of lysosome-related organelles complex 1 subunit 5 OS=Rattus norvegicus GN=Bloc1s5 PE=1 S...	229.0	[0..1]	[130..1]
gi\|114605402 - gi\|114605402\|ref\|XP_001166060.1\| PREDICTED: muted isoform 3 [Pan troglodytes] MUTED - muted homolog (mouse)	226.0	[0..1]	[130..1]
gi\|76651399 - gi\|76651399\|ref\|XP_581818.2\| PREDICTED: similar to Muted protein homolog [Bos taurus]	196.0	[0..1]	[130..30]
gi\|74004051 - gi\|74004051\|ref\|XP_851825.1\| PREDICTED: similar to Muted protein homolog [Canis familiaris]	176.0	[0..34]	[130..107]
BL1S5_CHICK - Biogenesis of lysosome-related organelles complex 1 subunit 5 OS=Gallus gallus GN=BLOC1S5 PE=2 SV=1	147.0	[0..1]	[130..1]
gi\|71834294, gi\|... - gi\|71834294\|ref\|NP_001025237.1\| muted [Danio rerio], gi\|66911273\|gb\|AAH96921.1\| Zgc:113385 [Danio re...	111.0	[0..33]	[126..4]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGGTETPV ACDAAQGGKK RDSLGTPGAA HLIIKDLGEI HSRLLDHRPV TQGEIRYFVK  60
   61 EFEEKRGLRE LRVLKNLENT IQETNECLLP KCRETMECGL GETLQRLQAA NDSICRLQQR 120
  121 EQERKKGLLD PGLVDLGTLL TMSCRDPPVS DEPSCNAARN YSCLLHSRI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits