YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|85362742, gi\|...
Organism:	Mus musculus
Length:	518 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|85362742, gi|....

Description	E-value	Query Range	Subject Range
gi\|3241847, gi\|1... - gi\|3241847\|dbj\|BAA28869.1\| calmodulin-dependent protein kinase II-gamma dash2 [Oryctolagus cuniculus...	563.0	[0..1]	[518..1]
gi\|26051208, gi\|... - gi\|6688228\|emb\|CAB65122.1\| calcium/calmodulin dependent protein kinase II beta 4 [Homo sapiens], gi\|...	559.0	[0..1]	[518..1]
gi\|56207097, gi\|... - gi\|56207097\|emb\|CAI25257.1\| calcium/calmodulin-dependent protein kinase II, beta [Mus musculus], gi\|...	558.0	[0..1]	[518..1]
gi\|73953037 - gi\|73953037\|ref\|XP_863819.1\| PREDICTED: similar to calcium/calmodulin-dependent protein kinase II ga...	556.0	[0..1]	[518..1]
gi\|631810 - gi\|631810\|pir\|\|S43845 Ca2+/calmodulin-dependent protein kinase (EC 2.7.1.123) II gamma-b chain - rat gi\|560651 - gi\|560651\|gb\|AAB30670.1\| Ca2+/calmodulin-dependent protein kinase II isoform gamma-b; CaM kinase II ...	553.0	[0..1]	[518..1]
gi\|73953033 - gi\|73953033\|ref\|XP_863772.1\| PREDICTED: similar to calcium/calmodulin-dependent protein kinase II ga... gi\|18448921 - gi\|18448921\|gb\|AAL69957.1\| CaM kinase II gamma G-1 [Mustela putorius furo] gi\|119574912 - gi\|119574912\|gb\|EAW54527.1\| calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma, isofo... gi\|47523472, gi\|... - gi\|47523472\|ref\|NP_999358.1\| calcium/calmodulin-dependent protein kinase II gamma [Sus scrofa], gi\|1...	551.0	[0..1]	[518..1]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTATCTRF TDDYQLFEEL GKGAFSVVRR CVKKTSTQEY AAKIINTKKL SARDHQKLER  60
   61 EARICRLLKH PNIVRLHDSI SEEGFHYLVF DLVTGGELFE DIVAREYYSE ADASHCIHQI 120
  121 LESVNHIHQH DIVHRDLKPE NLLLASKCKG AAVKLADFGL AIEVQGEQQA WFGFAGTPGY 180
  181 LSPEVLRKDP YGKPVDIWAC GVILYILLVG YPPFWDEDQH KLYQQIKAGA YDFPSPEWDT 240
  241 VTPEAKNLIN QMLTINPAKR ITADQALKHP WVCQRSTVAS MMHRQETVEC LRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.221849
Match:	2v7oA
Description:	No description for 2v7oA was found.

Predicted Domain #2

Region A:
Residues: [294-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNARRKLKGA ILTTMLVSRN FSAAKSLLNK KSDGGVKPQS NNKNSLVSPA QEPAPLQTAM  60
   61 EPQTTVVHNA TDGIKGSTES CNTTTEDEDL K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.30103
Match:	2aaoA
Description:	Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [385-518]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRKQEIIKIT EQLIEAINNG DFEAYTKICD PGLTSFEPEA LGNLVEGMDF HKFYFENLLS  60
   61 KNSKPIHTTI LNPHVHVIGE DAACIAYIRL TQYIDGQGRP RTSQSEETRV WHRRDGKWLN 120
  121 VHYHCSGAPA APLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.69897
Match:	2ux0A
Description:	No description for 2ux0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits