YRC Public Data Repository - Protein Structure Prediction

Protein:	CENPH_MOUSE
Organism:	Mus musculus
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CENPH_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114599933 - gi\|114599933\|ref\|XP_001145587.1\| PREDICTED: similar to kinetochore protein CENP-H [Pan troglodytes]	331.0	[0..1]	[241..60]
gi\|19263862 - gi\|19263862\|gb\|AAH25084.1\| Centromere protein H [Mus musculus]	306.0	[0..1]	[241..1]
gi\|149059208, gi... - gi\|149059208\|gb\|EDM10215.1\| rCG44590, isoform CRA_a [Rattus norvegicus], gi\|109465999\|ref\|XP_0010712...	306.0	[0..3]	[241..2]
CENPH - centromere protein H gi\|123995965 - gi\|123995965\|gb\|ABM85584.1\| centromere protein H [synthetic construct]	299.0	[0..1]	[241..1]
gi\|109077475 - gi\|109077475\|ref\|XP_001091765.1\| PREDICTED: similar to centromere protein H isoform 2 [Macaca mulatt...	271.0	[0..1]	[241..1]
CENPH_BOVIN - Centromere protein H OS=Bos taurus GN=CENPH PE=2 SV=1	261.0	[0..1]	[241..1]
gi\|73950121 - gi\|73950121\|ref\|XP_852630.1\| PREDICTED: similar to centromere protein H [Canis familiaris]	256.0	[0..23]	[220..115]
CENPH_CHICK - Centromere protein H OS=Gallus gallus GN=CENPH PE=1 SV=1	239.0	[0..13]	[239..6]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEQPRERSE AGAEACEEKR GLSQAAEERI EDRISLLLRL RAQTKQQLLE YKSMIDTNEE  60
   61 KTPEQIMQEK QIEVKIEELE NEIEDVKSNI EMKSLALSRM KLSVALRDNM ENMGPENCVL 120
  121 TDDMKHILKL QKLIMKSQEE SSELEKKLLD VRKKRLQLKQ ASRSKLLEIQ IEKNKQKEDV 180
  181 DKMENSEMIK TMKKKLQTEI KITTVVQHTF QGLILASKTN WAEDPALRET VLQLEKDLNT 240
  241 L

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.06
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits