YRC Public Data Repository - Protein Structure Prediction

Protein:	RM23_MOUSE
Organism:	Mus musculus
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM23_MOUSE.

Description	E-value	Query Range	Subject Range
RM23_RAT - 39S ribosomal protein L23, mitochondrial OS=Rattus norvegicus GN=Mrpl23 PE=2 SV=1	160.0	[0..1]	[146..1]
gi\|24116279 - gi\|24116279\|gb\|AAH38626.1\| Mitochondrial ribosomal protein L23 [Mus musculus]	157.0	[0..1]	[146..1]
MRPL23 - mitochondrial ribosomal protein L23	148.0	[0..1]	[146..1]
gi\|114635613 - gi\|114635613\|ref\|XP_508219.2\| PREDICTED: similar to ribosomal protein L23-related product [Pan trogl...	145.0	[0..1]	[146..31]
gi\|109104973 - gi\|109104973\|ref\|XP_001092196.1\| PREDICTED: similar to mitochondrial ribosomal protein L23 [Macaca m...	140.0	[0..1]	[146..1]
gi\|76613395 - gi\|76613395\|ref\|XP_871507.1\| PREDICTED: similar to 60S ribosomal protein L23a [Bos taurus]	139.0	[0..1]	[104..264]
gi\|46561792 - gi\|46561792\|gb\|AAT01114.1\| rpL23-SA fusion protein [rpL23-fusion expression vector pSA]	133.0	[0..18]	[144..1]
gi\|46561796 - gi\|46561796\|gb\|AAT01117.1\| rpL23-ScFv fusion protein [rpL23-fusion expression vector pScFV]	127.0	[0..18]	[131..1]

Back

Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARNVLYPLY QLGGPQLRVF RTNFFIQLVR PGTAQPEDTV QFRIPMEMTR VDLRNYLEQI  60
   61 YNVPVAAVRT RVQHGSNRRR DHKNVRIKKP DYKVAYVQLA HGQTFTFPDL FPEKDPRSPE 120
  121 PLEEELPQQR QSSDLRCPGI PSWFGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1p85R
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.49719655437057	bayes_pls_golite062009
structural molecule activity	8.91971353502188	bayes_pls_golite062009
RNA binding	2.08123706428867	bayes_pls_golite062009
nucleic acid binding	1.05505904516672	bayes_pls_golite062009
binding	0.810197411226908	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: