YRC Public Data Repository - Protein Structure Prediction

Protein:	NEUT_MOUSE
Organism:	Mus musculus
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NEUT_MOUSE.

Description	E-value	Query Range	Subject Range
NEUT_RAT - Neurotensin/neuromedin N OS=Rattus norvegicus GN=Nts PE=1 SV=1	343.0	[0..1]	[169..1]
gi\|109097971 - gi\|109097971\|ref\|XP_001090068.1\| PREDICTED: neurotensin [Macaca mulatta]	338.0	[0..1]	[169..2]
gi\|84578959 - gi\|84578959\|dbj\|BAE72913.1\| hypothetical protein [Macaca fascicularis]	332.0	[0..1]	[169..2]
NTS - neurotensin	324.0	[0..1]	[169..2]
gi\|114646094 - gi\|114646094\|ref\|XP_001165130.1\| PREDICTED: neurotensin/neuromedin N isoform 3 [Pan troglodytes]	321.0	[0..1]	[169..2]
NEUT_BOVIN - Neurotensin/neuromedin N precursor [Contains: Large neuromedin N - Bos taurus (Bovine)	317.0	[0..1]	[169..1]
NEUT_CANLF - Neurotensin/neuromedin N OS=Canis lupus familiaris GN=NTS PE=1 SV=1 gi\|164034 - gi\|164034\|gb\|AAA30878.1\| preproneurotensin (5' end put.); putative	311.0	[0..1]	[169..2]

Back

Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGMNLQLVC LTLLAFSSWS LCSDSEEDVR ALEADLLTNM HTSKISKASP PSWKMTLLNV  60
   61 CSLINNVNSP AEEAGDMHDD DLVGKRKLPL VLDGFSLEAM LTIFQLQKIC RSRAFQHWEI 120
  121 IQEDILDNVN DKNEKEEVIK RKIPYILKRQ LYENKPRRPY ILKRGSYYY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	146.060481
Match:	PF07421.2
Description:	No description for PF07421.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits