YRC Public Data Repository - Protein Structure Prediction

Protein:	RNF11_MOUSE
Organism:	Mus musculus
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNF11_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|80476313, gi\|... - gi\|80476313\|gb\|AAI08493.1\| Rnf11-a protein [Xenopus laevis], gi\|27696226\|gb\|AAH43736.1\| Rnf11-a prot...	135.0	[0..1]	[154..1]
gi\|109475302 - gi\|109475302\|ref\|XP_001071243.1\| PREDICTED: similar to RING finger protein 11 (NEDD4 WW domain-bindi...	134.0	[0..1]	[154..106]
gi\|30584033, gi\|... - gi\|61369935\|gb\|AAX43415.1\| ring finger protein 11 [synthetic construct], gi\|61369928\|gb\|AAX43414.1\| ...	134.0	[0..1]	[154..1]
gi\|12004970 - gi\|12004970\|gb\|AAG44245.1\| Nedd4 WW domain-binding protein 2 [Mus musculus]	134.0	[0..1]	[154..10]
gi\|126305660 - gi\|126305660\|ref\|XP_001362600.1\| PREDICTED: similar to Nedd4 WW domain-binding protein 2 [Monodelphi... RNF11_BOVIN - RING finger protein 11 OS=Bos taurus GN=RNF11 PE=2 SV=1 tr\|G1STC5\|G1STC5... - pep:novel chromosome:oryCun2:13:115474161:115520678:-1 gene:ENSOCUG00000007582 transcript:ENSOCUT000... tr\|M3XAF7\|M3XAF7... - Ring finger protein 11 OS=Felis catus GN=RNF11 PE=4 SV=1 ENSPTRT00000001375 - null RNF11 - ring finger protein 11 gi\|109476905, gi... - gi\|149035684\|gb\|EDL90365.1\| rCG50351, isoform CRA_b [Rattus norvegicus], gi\|149035682\|gb\|EDL90363.1\|... gi\|168277934 - gi\|168277934\|dbj\|BAG10945.1\| RING finger protein 11 [synthetic construct] CCDS556.1_1 - null tr\|G3GVY1\|G3GVY1... - RING finger protein 11 OS=Cricetulus griseus GN=I79_001887 PE=4 SV=1 gi\|109004758 - gi\|109004758\|ref\|XP_001111014.1\| PREDICTED: ring finger protein 11 [Macaca mulatta] ENSCJAT00000042405 - null	134.0	[0..1]	[154..1]
gi\|62858331, gi\|... - gi\|89273822\|emb\|CAJ83667.1\| ring finger protein 11 [Xenopus tropicalis], gi\|62858331\|ref\|NP_00101643...	134.0	[0..1]	[154..1]
gi\|47225640 - gi\|47225640\|emb\|CAG07983.1\| unnamed protein product [Tetraodon nigroviridis]	134.0	[0..1]	[154..1]
gi\|53132254, gi\|... - gi\|57529639\|ref\|NP_001006540.1\| ring finger protein 11 [Gallus gallus], gi\|53132254\|emb\|CAG31887.1\| ...	134.0	[0..1]	[154..1]
gi\|76253796, gi\|... - gi\|76253796\|ref\|NP_001028905.1\| hypothetical protein LOC619251 [Danio rerio], gi\|66911032\|gb\|AAH9715...	133.0	[0..1]	[154..1]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNCLKSPTS DDISLLHESQ SDRASFGEGT EPDQEPPPPY QEQVPVPIYH PTPSQTRLAT  60
   61 QLTEEEQIRI AQRIGLIQHL PKGVYDPGRD GSEKKIRECV ICMMDFVYGD PIRFLPCMHI 120
  121 YHLDCIDDWL MRSFTCPSCM EPVDAALLSS YETN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.39794
Match:	1x4jA
Description:	Solution structure of RING finger in RING finger protein 38
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits