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View Structure Prediction Details

Protein: gi|187952795, gi...
Organism: Mus musculus
Length: 287 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|187952795, gi....

Description E-value Query
Range
Subject
Range
gi|26343457 - gi|26343457|dbj|BAC35385.1| unnamed protein product [Mus musculus]
318.0 [0..1] [287..1]
MARH2_RAT - E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2 PE=1 SV=1
246.0 [0..1] [246..1]
gi|21595786 - gi|21595786|gb|AAH32624.1| MARCH2 protein [Homo sapiens]
234.0 [0..1] [246..1]
MARH2_BOVIN - E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2 SV=1
221.0 [0..1] [246..1]
MARH2_DANRE - E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2 SV=1
209.0 [0..1] [244..1]
gi|114601444, gi... - gi|114601446|ref|XP_001158456.1| PREDICTED: membrane-associated ring finger (C3HC4) 3 isoform 2 [Pan...
206.0 [0..1] [244..1]

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Predicted Domain #1
Region A:
Residues: [1-60]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTGDCCHLP GSLCDCSSSP AFSKVVEATG LGPPQYVAQV TSRDGRLLST VIRALDSQSD  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [61-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CPFCRICHEG ANGENLLSPC GCTGTLGAVH KSCLEKWLSS SNTSYCELCH TEFAVEKRP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.69897
Match: 2d8sA
Description: No description for 2d8sA was found.

Predicted Domain #3
Region A:
Residues: [120-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPLTEWLKDP GPRTEKRTLC CDMVCFVFIT PLAAISGWLC LRGAQDHLRL HSRLEAVGLI  60
   61 ALTIALFTIY VLWTLVSFRY HCQLYSEWRK TNQKVRLKIR EADGSEDPHH SLLATGLLKK 120
  121 LQRFSPLSLR QEHGSIQGGM VQVELRVLHL RLKEASGRLT PRHLGQVH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.954
Match: 1t6iA
Description: Nickel Superoxide Dismutase (NiSOD) Apo Structure
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle