YRC Public Data Repository - Protein Structure Prediction

Protein:	AMTN_MOUSE
Organism:	Mus musculus
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMTN_MOUSE.

Description	E-value	Query Range	Subject Range
AMTN - amelotin	315.0	[0..1]	[213..1]
gi\|114594410 - gi\|114594410\|ref\|XP_001160426.1\| PREDICTED: similar to RSTI689 [Pan troglodytes]	308.0	[0..1]	[213..1]
gi\|148673416, gi... - gi\|82898003\|ref\|XP_909777.1\| PREDICTED: amelotin [Mus musculus], gi\|148673416\|gb\|EDL05363.1\| mCG2158...	305.0	[0..1]	[213..1]
gi\|109074578 - gi\|109074578\|ref\|XP_001106135.1\| PREDICTED: similar to Protein UNQ689/PRO1329 homolog precursor [Mac...	281.0	[0..1]	[200..1]
AMTN_RAT - Amelotin OS=Rattus norvegicus GN=Amtn PE=1 SV=1	272.0	[0..1]	[213..1]
gi\|73975369 - gi\|73975369\|ref\|XP_854599.1\| PREDICTED: similar to Protein UNQ689/PRO1329 homolog precursor [Canis f...	238.0	[0..1]	[211..1]
gi\|76691467 - gi\|76691467\|ref\|XP_875818.1\| PREDICTED: similar to Protein UNQ689/PRO1329 homolog precursor, partial...	136.0	[0..70]	[209..1]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTMILLLCL LGSAQSLPKQ LNPASGVPAT KPTPGQVTPL PQQQPNQVFP SISLIPLTQL  60
   61 LTLGSDLPLF NPAAGPHGAH TLPFTLGPLN GQQQLQPQML PIIVAQLGAQ GALLSSEELP 120
  121 LASQIFTGLL IHPLFPGAIP PSGQAGTKPD VQNGVLPTRQ AGAKAVNQGT TPGHVTTPGV 180
  181 TDDDDYEMST PAGLRRATHT TEGTTIDPPN RTQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits