YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2137658, gi\|6...
Organism:	Mus musculus
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2137658, gi|6....

Description	E-value	Query Range	Subject Range
TKNK_MOUSE - Tachykinin-3 OS=Mus musculus GN=Tac3 PE=3 SV=2	226.0	[0..1]	[116..1]
TKNK_BOVIN - Tachykinin-3 OS=Bos taurus GN=TAC3 PE=3 SV=1	210.0	[0..1]	[116..1]
gi\|48146503 - gi\|48146503\|emb\|CAG33474.1\| TAC3 [Homo sapiens]	204.0	[0..1]	[116..1]
gi\|114644192 - gi\|114644192\|ref\|XP_001168338.1\| PREDICTED: tachykinin 3 [Pan troglodytes]	202.0	[0..1]	[116..1]
gi\|55741789 - ref\|NP_001007197.1\| tachykinin 3 [Sus scrofa] TKNK_PIG - Neurokinin-B OS=Sus scrofa GN=TAC3 PE=1 SV=2	195.0	[0..1]	[116..1]
gi\|73968444 - gi\|73968444\|ref\|XP_849031.1\| PREDICTED: similar to tachykinin 2 [Canis familiaris]	192.0	[0..1]	[116..1]
TKNK_RAT - Tachykinin-3 OS=Rattus norvegicus GN=Tac3 PE=3 SV=1	192.0	[0..1]	[116..1]
gi\|24817670 - gi\|24817670\|emb\|CAD45185.1\| preprotachykinin B [Ovis aries]	191.0	[0..8]	[109..1]
gi\|109097348 - gi\|109097348\|ref\|XP_001115535.1\| PREDICTED: tachykinin 3 (neuromedin K, neurokinin beta) [Macaca mul...	188.0	[0..1]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSAMLFAAV LALSLAWTFG AVCEEPQEQG GRLSKDSDLY QLPPSLLRRL YDSRPVSLEG  60
   61 LLKVLSKASV GPKETSLPQK RDMHDFFVGL MGKRNSQPDT PTDVVEENTP SFGILK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	34.221849
Match:	PF03823.5
Description:	No description for PF03823.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits