YRC Public Data Repository - Protein Structure Prediction

Protein:	GLUC_MOUSE
Organism:	Mus musculus
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLUC_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109099959 - gi\|109099959\|ref\|XP_001093871.1\| PREDICTED: similar to glucagon preproprotein [Macaca mulatta]	254.0	[0..1]	[180..84]
GLUC_PIG - Glucagon OS=Sus scrofa GN=GCG PE=1 SV=4	250.0	[0..1]	[178..1]
GLUC_RAT - Glucagon OS=Rattus norvegicus GN=Gcg PE=1 SV=1	250.0	[0..1]	[180..1]
gi\|30583853, gi\|... - gi\|60653543\|gb\|AAX29465.1\| glucagon [synthetic construct], gi\|60653541\|gb\|AAX29464.1\| glucagon [synt...	249.0	[0..1]	[180..1]
GCG - glucagon gi\|61361208, gi\|... - gi\|61361208\|gb\|AAX42011.1\| glucagon [synthetic construct], gi\|61361203\|gb\|AAX42010.1\| glucagon [synt... ENSPTRT00000023309 - null	249.0	[0..1]	[180..1]
GLUC_MESAU - Glucagon OS=Mesocricetus auratus GN=GCG PE=2 SV=2	249.0	[0..1]	[180..1]
GLUC_OCTDE - Glucagon OS=Octodon degus GN=GCG PE=2 SV=1	249.0	[0..1]	[180..1]
GLUC_BOVIN - Glucagon OS=Bos taurus GN=GCG PE=1 SV=1	248.0	[0..1]	[180..1]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTIYFVAGL LIMLVQGSWQ HALQDTEENP RSFPASQTEA HEDPDEMNED KRHSQGTFTS  60
   61 DYSKYLDSRR AQDFVQWLMN TKRNRNNIAK RHDEFERHAE GTFTSDVSSY LEGQAAKEFI 120
  121 AWLVKGRGRR DFPEEVAIAE ELGRRHADGS FSDEMSTILD NLATRDFINW LIQTKITDKK 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits