YRC Public Data Repository - Protein Structure Prediction

Protein:	IL17B_MOUSE
Organism:	Mus musculus
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IL17B_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|62664510, gi\|... - gi\|62664510\|ref\|XP_341622.2\| PREDICTED: similar to Interleukin-17B precursor (IL-17B) (Cytokine-like...	264.0	[0..1]	[180..1]
gi\|13649471 - gi\|13649471\|gb\|AAK37427.1\|AF250308_1 cytokine CX1 precusor [Mus musculus]	263.0	[0..1]	[180..1]
gi\|114602737 - gi\|114602737\|ref\|XP_001163413.1\| PREDICTED: interleukin 17B [Pan troglodytes]	252.0	[0..1]	[180..1]
gi\|57085757 - gi\|57085757\|ref\|XP_546311.1\| PREDICTED: similar to Interleukin-17B precursor (IL-17B) (Cytokine-like...	249.0	[0..1]	[180..1]
gi\|109079294 - gi\|109079294\|ref\|XP_001106071.1\| PREDICTED: interleukin 17B [Macaca mulatta]	244.0	[0..1]	[180..1]
IL17B - interleukin 17B	241.0	[0..1]	[180..1]
IL17B_MESAU - Interleukin-17B (Fragment) OS=Mesocricetus auratus GN=IL17B PE=2 SV=1	236.0	[0..1]	[178..1]
gi\|194668391, gi... - gi\|61841541\|ref\|XP_581208.1\| PREDICTED: similar to Interleukin-17B precursor (IL-17B) (Cytokine-like...	233.0	[0..1]	[180..1]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWPHSLLFL LAISIFLAPS HPRNTKGKRK GQGRPSPLAP GPHQVPLDLV SRVKPYARME  60
   61 EYERNLGEMV AQLRNSSEPA KKKCEVNLQL WLSNKRSLSP WGYSINHDPS RIPADLPEAR 120
  121 CLCLGCVNPF TMQEDRSMVS VPVFSQVPVR RRLCPQPPRP GPCRQRVVME TIAVGCTCIF 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1jpyA
Description:	Interleukin 17F, IL-17F
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.7172169551357	bayes_pls_golite062009
protein binding	1.71012476166555	bayes_pls_golite062009
receptor binding	1.57289088064508	bayes_pls_golite062009
cytokine activity	1.27920752329227	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: