YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCS3_MOUSE
Organism:	Mus musculus
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCS3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114596992 - gi\|114596992\|ref\|XP_001159544.1\| PREDICTED: similar to microsomal signal peptidase [Pan troglodytes]	271.0	[0..1]	[180..1]
gi\|109503341 - gi\|109503341\|ref\|XP_001058844.1\| PREDICTED: similar to signal peptidase complex subunit 3 homolog [R...	270.0	[0..1]	[180..1]
ENSCJAT00000010473 - null gi\|125988403, gi... - gi\|32766258\|gb\|AAH54817.1\| Signal peptidase complex subunit 3 homolog (S. cerevisiae) [Mus musculus]... SPCS3_BOVIN - Signal peptidase complex subunit 3 OS=Bos taurus GN=SPCS3 PE=2 SV=1 tr\|U3KPB2\|U3KPB2... - Uncharacterized protein OS=Oryctolagus cuniculus GN=SPCS3 PE=4 SV=1 SPCS3 - signal peptidase complex subunit 3 homolog (S. cerevisiae) SPCS3_CANLF - Signal peptidase complex subunit 3 OS=Canis lupus familiaris GN=SPCS3 PE=1 SV=1	270.0	[0..1]	[180..1]
gi\|26390287 - gi\|26390287\|dbj\|BAC25873.1\| unnamed protein product [Mus musculus]	269.0	[0..1]	[180..1]
SPCS3_CHICK - Signal peptidase complex subunit 3 OS=Gallus gallus GN=SPC22 PE=1 SV=1	269.0	[0..1]	[180..1]
gi\|47937536, gi\|... - gi\|47937536\|gb\|AAH72107.1\| MGC79052 protein [Xenopus laevis], gi\|147905965\|ref\|NP_001085217.1\| hypot...	266.0	[0..1]	[180..1]
gi\|62859239 - gi\|62859239\|ref\|NP_001017094.1\| signal peptidase complex subunit 3 [Xenopus (Silurana) tropicalis]	265.0	[0..1]	[180..1]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLLSRANS LFAFTLSVMA ALTLGCILTT AFKDRSAPVR LHVSRILLKK VEDFTGPRKK  60
   61 SDLGFITFHI SADLEKTFDW NVKQLFLYLS AEYSTKSNAV NQVVLWDKIL LRGENPKLNL 120
  121 KDVKSKYFFF DDGHGLKGNR NVTLTLSWQV IPIAGILPLV TGSGRVSVPF PDSYEIATTF 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	117.0
Match:	PF04573.3
Description:	No description for PF04573.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits