YRC Public Data Repository - Protein Structure Prediction

Protein:	FXYD4_MOUSE
Organism:	Mus musculus
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FXYD4_MOUSE.

Description	E-value	Query Range	Subject Range
FXYD3_PIG - FXYD domain-containing ion transport regulator 3 OS=Sus scrofa GN=FXYD3 PE=3 SV=1	148.0	[0..1]	[88..1]
gi\|73948506 - gi\|73948506\|ref\|XP_855497.1\| PREDICTED: similar to FXYD domain-containing ion transport regulator 3 ...	142.0	[0..1]	[88..1]
gi\|114676672 - gi\|114676672\|ref\|XP_001158172.1\| PREDICTED: similar to MAT8 protein isoform 8 [Pan troglodytes]	138.0	[0..1]	[87..54]
FXYD3_MOUSE - FXYD domain-containing ion transport regulator 3 OS=Mus musculus GN=Fxyd3 PE=2 SV=1	137.0	[0..1]	[88..1]
FXYD3 - FXYD domain containing ion transport regulator 3 gi\|60656499, gi\|... - gi\|60656501\|gb\|AAX32814.1\| FXYD domain containing ion transport regulator 3 [synthetic construct], g...	137.0	[0..1]	[87..1]
gi\|60653451, gi\|... - gi\|60653453\|gb\|AAX29421.1\| FXYD domain containing ion transport regulator 3 [synthetic construct], g...	137.0	[0..1]	[87..1]
FXYD3_RAT - FXYD domain-containing ion transport regulator 3 OS=Rattus norvegicus GN=Fxyd3 PE=3 SV=1	135.0	[0..1]	[88..1]
gi\|109124339 - gi\|109124339\|ref\|XP_001093807.1\| PREDICTED: similar to FXYD domain-containing ion transport regulato...	131.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEITCAFLL LLAGLPALEA SDPVDKDSPF YYDWESLQLG GLIFGGLLCI AGIAMALSGK  60
   61 CKCRRTHKPS SLPGKATPLI IPGSANTC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	2jo1A
Description:	No description for 2jo1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits