YRC Public Data Repository - Protein Structure Prediction

Protein:	KRA51_MOUSE
Organism:	Mus musculus
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KRA51_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114597020 - gi\|114597020\|ref\|XP_001160536.1\| PREDICTED: similar to Ten-m3 isoform 4 [Pan troglodytes]	219.0	[0..2]	[230..532]
ODZ3 - odz, odd Oz/ten-m homolog 3 (Drosophila)	219.0	[0..2]	[230..532]
gi\|109076275 - gi\|109076275\|ref\|XP_001091761.1\| PREDICTED: similar to odd Oz/ten-m homolog 3 isoform 4 [Macaca mula...	218.0	[0..2]	[230..532]
gi\|76655597 - gi\|76655597\|ref\|XP_588988.2\| PREDICTED: similar to odd Oz/ten-m homolog 3 isoform 1 [Bos taurus]	218.0	[0..2]	[230..532]
gi\|73979524 - gi\|73979524\|ref\|XP_857783.1\| PREDICTED: similar to odd Oz/ten-m homolog 3 isoform 2 [Canis familiari...	217.0	[0..2]	[230..655]
gi\|6760369 - gi\|6760369\|gb\|AAF28316.1\|AF195418_1 ODZ3 [Mus musculus]	216.0	[0..2]	[230..179]
gi\|50746483 - gi\|50746483\|ref\|XP_420518.1\| PREDICTED: similar to Ten-m3 [Gallus gallus]	216.0	[0..2]	[230..683]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCCGCSGGC GSSCGGCGSS CGGCGSGCGG CGSNCGGCGS SCCKPVCCCK PVCCCVPVCS  60
   61 CSSCGGCGSS CGGCGSCGSS CGGCGSSCCK PVCCCVPVCS CSSCGGCKPC CCQSSCCKPC 120
  121 CSSGCGSSCC QSSCCKPCCC QSSCCKPCCC QSSCCKPCCS SGCGSSCCQS SCCKPCCCQS 180
  181 SCCKPCCCQS SCCKPCCCQS SCCKPCCCQS SCCKPCCSSG CGSSCCQDSC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.8
Match:	2gy5A
Description:	No description for 2gy5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits