YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CCKN_MOUSE
Organism: Mus musculus
Length: 115 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCKN_MOUSE.

Description E-value Query
Range
Subject
Range
CCKN_MOUSE - Cholecystokinin OS=Mus musculus GN=Cck PE=1 SV=3
177.0 [0..1] [115..1]
CCKN_RAT - Cholecystokinin OS=Rattus norvegicus GN=Cck PE=1 SV=1
176.0 [0..1] [115..1]
gi|55620065 - gi|55620065|ref|XP_516386.1| PREDICTED: cholecystokinin isoform 2 [Pan troglodytes]
174.0 [0..1] [115..1]
gi|30584119, gi|... - gi|60653099|gb|AAX29244.1| cholecystokinin [synthetic construct], gi|60653097|gb|AAX29243.1| cholecy...
174.0 [0..1] [115..1]
CCK - cholecystokinin
gi|157927968, gi... - gi|60656149|gb|AAX32638.1| cholecystokinin [synthetic construct], gi|60656147|gb|AAX32637.1| cholecy...
174.0 [0..1] [115..1]
CCKN_BOVIN - Cholecystokinin OS=Bos taurus GN=CCK PE=1 SV=2
172.0 [0..1] [115..1]
gi|69380 - pir||GMPGCP cholecystokinin precursor - pig
CCKN_PIG - Cholecystokinin OS=Sus scrofa GN=CCK PE=1 SV=1
172.0 [0..1] [115..1]
CCKN_MACFA - Cholecystokinin OS=Macaca fascicularis GN=CCK PE=1 SV=1
170.0 [0..1] [115..1]
CCKN_STRCA - Cholecystokinin OS=Struthio camelus GN=CCK PE=1 SV=1
165.0 [0..1] [115..1]
CCKN_TRASC - Cholecystokinin OS=Trachemys scripta PE=1 SV=2
162.0 [0..1] [115..1]

Back

Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSGVCLCVV MAVLAAGALA QPVVPAEATD PVEQRAEEAP RRQLRAVLRP DREPRARLGA  60
   61 LLARYIQQVR KAPSGRMSVL KNLQSLDPSH RISDRDYMGW MDFGRRSAED YEYPS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 53.657577
Match: PF00918.8
Description: No description for PF00918.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.493 N/A N/A b.82.3 cAMP-binding domain-like
View Download 0.344 N/A N/A a.47.2 t-snare proteins
View Download 0.344 N/A N/A a.47.2 t-snare proteins
View Download 0.327 N/A N/A a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.301 N/A N/A a.1.1 Globin-like
View Download 0.300 N/A N/A a.1.1 Globin-like
View Download 0.300 N/A N/A a.1.1 Globin-like
View Download 0.286 N/A N/A a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.256 N/A N/A a.7.5 Tubulin chaperone cofactor A


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle