YRC Public Data Repository - Protein Structure Prediction

Protein:	RPC8_MOUSE
Organism:	Mus musculus
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPC8_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|13359203 - gi\|13359203\|dbj\|BAB33335.1\| KIAA1665 protein [Homo sapiens]	178.0	[0..1]	[204..14]
gi\|109094365, gi... - gi\|109094365\|ref\|XP_001105322.1\| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypepti... gi\|90077470 - gi\|90077470\|dbj\|BAE88415.1\| unnamed protein product [Macaca fascicularis]	172.0	[0..1]	[204..1]
gi\|74220193 - gi\|74220193\|dbj\|BAE31279.1\| unnamed protein product [Mus musculus]	167.0	[0..1]	[204..1]
RPC8_BOVIN - DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus GN=POLR3H PE=2 SV=1	164.0	[0..1]	[204..1]
gi\|73968962 - gi\|73968962\|ref\|XP_849136.1\| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide H...	163.0	[0..1]	[204..1]
gi\|118404162, gi... - gi\|118404162\|ref\|NP_001072397.1\| hypothetical protein LOC779851 [Xenopus (Silurana) tropicalis], gi\|...	160.0	[0..1]	[204..1]
gi\|91092914 - gi\|91092914\|ref\|XP_971430.1\| PREDICTED: similar to DNA-directed RNA polymerase III 25 kDa polypeptid...	155.0	[0..1]	[203..1]
gi\|68517562, gi\|... - gi\|68544732\|ref\|ZP_00584344.1\| Exoribonuclease II [Shewanella baltica OS155], gi\|68517562\|gb\|EAN4121...	153.0	[0..15]	[194..277]
gi\|50540012, gi\|... - gi\|50540012\|ref\|NP_001002476.1\| polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) [Danio re...	152.0	[0..1]	[203..1]

Back

Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVLVEMVDT VRIPPWQFER KLNDSIAEEL NKKLANKVVY NVGLCICLFD ITKLEDAYVF  60
   61 PGDGASHTKV HFRYVVFHPF LDEILIGKIK GCSPEGVHVS LGFFDDILIP PESLQQPAKF 120
  121 DEAEQVWVWE YETEEGAHDL YMDTGEEIRF RVVDESFVDT SPTGPSSAEA ASSSEELPKK 180
  181 EAPYTLVGSI SEPGLGLLSW WTSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.221849
Match:	2ckzB
Description:	No description for 2ckzB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits