YRC Public Data Repository - Protein Structure Prediction

Protein:	COX8A_MOUSE
Organism:	Mus musculus
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX8A_MOUSE.

Description	E-value	Query Range	Subject Range
COX8A_OTOCR - Cytochrome c oxidase subunit 8A, mitochondrial OS=Otolemur crassicaudatus GN=COX8A PE=3 SV=1	123.0	[0..1]	[69..1]
COX8A_BOVIN - Cytochrome c oxidase subunit 8A, mitochondrial OS=Bos taurus GN=COX8A PE=1 SV=1	122.0	[0..1]	[69..1]
COX8A_NYCCO - Cytochrome c oxidase subunit 8A, mitochondrial OS=Nycticebus coucang GN=COX8A PE=3 SV=1	121.0	[0..1]	[69..1]
COX8A_TARSY - Cytochrome c oxidase subunit 8A, mitochondrial OS=Tarsius syrichta GN=COX8A PE=3 SV=1	121.0	[0..1]	[69..1]
COX8A_EULFU - Cytochrome c oxidase subunit 8A, mitochondrial OS=Eulemur fulvus fulvus GN=COX8A PE=3 SV=1 gi\|30409796 - gi\|30409796\|gb\|AAP32256.1\| cytochrome c oxidase subunit VIII liver form [Eulemur fulvus]	119.0	[0..1]	[69..1]
COX8A_TRACR - Cytochrome c oxidase subunit 8A, mitochondrial OS=Trachypithecus cristatus GN=COX8A PE=3 SV=1	116.0	[0..1]	[69..1]
gi\|109105621 - gi\|109105621\|ref\|XP_001115516.1\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIII-liver/h... COX8A_MACFA - Cytochrome c oxidase subunit 8A, mitochondrial OS=Macaca fascicularis GN=COX8A PE=3 SV=1	115.0	[0..1]	[69..1]
gi\|67969774 - gi\|67969774\|dbj\|BAE01235.1\| unnamed protein product [Macaca fascicularis]	115.0	[0..1]	[69..1]
COX8A_RAT - Cytochrome c oxidase subunit 8A, mitochondrial OS=Rattus norvegicus GN=Cox8a PE=1 SV=3	114.0	[0..1]	[69..1]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLTPLLLR SLTGSARRLM VPRAQVHSKP AREQLGVLDI TIGLTSCFVC CLLPAGWVLS  60
   61 HLESYKKRE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.620	a.74.1	Cyclin-like
View	Download	0.299	a.77.1	DEATH domain
View	Download	0.677	d.43.1	Elongation factor Ts (EF-Ts), dimerisation domain
View	Download	0.305	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.392	a.32.1	Transcription factor IIA (TFIIA), alpha-helical domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits