YRC Public Data Repository - Protein Structure Prediction

Protein:	TPC6B_MOUSE
Organism:	Mus musculus
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPC6B_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|50748454 - gi\|50748454\|ref\|XP_421252.1\| PREDICTED: similar to Trafficking protein particle complex subunit 6B [...	259.0	[0..1]	[158..1]
gi\|73536260, gi\|... - gi\|73536261\|pdb\|2BJN\|B Chain B, X-Ray Structure Of Human Tpc6, gi\|73536260\|pdb\|2BJN\|A Chain A, X-Ray...	259.0	[0..1]	[158..3]
TRAPPC6B - trafficking protein particle complex 6B tr\|M3WUI2\|M3WUI2... - Trafficking protein particle complex 6B OS=Felis catus GN=TRAPPC6B PE=4 SV=1 ENSOCUP000000018... - pep:novel chromosome:oryCun2:17:58752192:58764624:-1 gene:ENSOCUG00000002171 transcript:ENSOCUT00000... ENSCJAT00000031745 - null gi\|57090101 - gi\|57090101\|ref\|XP_537419.1\| PREDICTED: similar to Trafficking protein particle complex subunit 6B [... gi\|109083419 - gi\|109083419\|ref\|XP_001092941.1\| PREDICTED: trafficking protein particle complex 6B [Macaca mulatta] gi\|114652760 - gi\|114652760\|ref\|XP_509918.2\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes] TPC6B_BOVIN - Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1 gi\|149692841 - gi\|149692841\|ref\|XP_001492624.1\| PREDICTED: similar to trafficking protein particle complex 6B isofo...	258.0	[0..1]	[158..1]
gi\|149051293, gi... - gi\|27664540\|ref\|XP_216708.1\| PREDICTED: similar to Trafficking protein particle complex subunit 6B [...	254.0	[0..1]	[158..1]
gi\|54400560, gi\|... - gi\|54400560\|ref\|NP_001006029.1\| trafficking protein particle complex 6b [Danio rerio], gi\|53733879\|g...	243.0	[0..1]	[158..1]
gi\|148695761, gi... - gi\|94368477\|ref\|XP_978516.1\| PREDICTED: similar to Trafficking protein particle complex subunit 6B [...	243.0	[0..1]	[158..1]
gi\|28279847, gi\|... - gi\|28279847\|gb\|AAH44077.1\| MGC52668 protein [Xenopus laevis], gi\|148222647\|ref\|NP_001079541.1\| hypot...	237.0	[0..1]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEALFLLL HNEMVSGVYK SAEQGEVENG RCVTKLESMG FRVGQGLIER FTKDTARFKD  60
   61 ELDIMKFICK DFWTTVFKKQ IDNLRTNHQG IYVLQDNKFR LLIQLSAGKQ YLEHASKYLA 120
  121 FTCGLIRGGL SNLGIKSIVT AEVSSMPACK FQVMIQKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.522879
Match:	2bjnA
Description:	X-ray Structure of human TPC6
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits