YRC Public Data Repository - Protein Structure Prediction

Protein:	RM13_MOUSE
Organism:	Mus musculus
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM13_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|55741549 - ref\|NP_001006986.1\| similar to mitochondrial ribosomal protein L13 [Rattus norvegicus] gi\|55741549, gi\|... - gi\|55741549\|ref\|NP_001006986.1\| mitochondrial ribosomal protein L13 [Rattus norvegicus], gi\|54261554...	231.0	[0..1]	[178..1]
gi\|73974567 - gi\|73974567\|ref\|XP_539150.2\| PREDICTED: similar to mitochondrial ribosomal protein L13 [Canis famili...	223.0	[0..1]	[178..1]
CCDS6332.1_1 - null gi\|109087347 - gi\|109087347\|ref\|XP_001097952.1\| PREDICTED: similar to mitochondrial ribosomal protein L13 [Macaca m...	223.0	[0..1]	[178..1]
gi\|114621492 - gi\|114621492\|ref\|XP_519928.2\| PREDICTED: mitochondrial ribosomal protein L13 isoform 3 [Pan troglody...	222.0	[0..1]	[178..1]
gi\|33585876 - gi\|33585876\|gb\|AAH55470.1\| Mrpl13 protein [Mus musculus]	222.0	[0..4]	[178..1]
gi\|123992882, gi... - gi\|123999768\|gb\|ABM87394.1\| mitochondrial ribosomal protein L13 [synthetic construct], gi\|123993623\|... MRPL13 - mitochondrial ribosomal protein L13	221.0	[0..1]	[178..1]
gi\|26249811, gi\|... - gi\|26249811\|ref\|NP_755851.1\| 50S ribosomal protein L13 [Escherichia coli CFT073], gi\|26110239\|gb\|AAN... gi\|254038390, gi... - gi\|254038390\|ref\|ZP_04872448.1\| 50S ribosomal subunit protein L13 [Escherichia sp. 1_1_43], gi\|22684... gi\|24114518, gi\|... - ref\|NP_709028.1\| 50S ribosomal subunit protein L13 [Shigella flexneri 2a str. 301], gb\|AAN44735.1\| ... gi\|91212650, gi\|... - gi\|91212650\|ref\|YP_542636.1\| 50S ribosomal subunit protein L13 [Escherichia coli UTI89], gi\|91074224... gi\|237706023, gi... - gi\|237706023\|ref\|ZP_04536504.1\| 50S ribosomal subunit protein L13 [Escherichia sp. 3_2_53FAA], gi\|22...	217.0	[0..1]	[145..26]
RM13_BOVIN - 39S ribosomal protein L13, mitochondrial OS=Bos taurus GN=MRPL13 PE=1 SV=1	216.0	[0..1]	[178..1]
gi\|110807093, gi... - gi\|110807093\|ref\|YP_690613.1\| 50S ribosomal subunit protein L13 [Shigella flexneri 5 str. 8401], gi\|...	214.0	[0..1]	[145..19]
gi\|114773863, gi... - gi\|114773863\|ref\|ZP_01450822.1\| 50S ribosomal subunit protein L13 [alpha proteobacterium HTCC2255], ... gi\|114773863 - gi\|114773863\|ref\|ZP_01450822.1\| 50S ribosomal subunit protein L13 [alpha proteobacterium HTCC2255] gi\|221135443 - gi\|221135443\|ref\|ZP_03561746.1\| 50S ribosomal protein L13 [Glaciecola sp. HTCC2999]	214.0	[0..1]	[145..1]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFSRAPQQ WATFARMWYL LDGKMQPPGK LAVIASNKLQ GLNKPVYHQL SDCGDHVVII  60
   61 NTRHIAFSGN KWEQKVYSSH TGYPGGFRQV TAAQLHRKDP VAIVKLAIYG MLPKNLHRRT 120
  121 MMQRLHLFPD EDIPEDILKN LVEELPQPRR VPKRLDEYTQ EEIEAFPRVW TPPDDFRM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.09691
Match:	2ftcH
Description:	No description for 2ftcH was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits