YRC Public Data Repository - Protein Structure Prediction

Protein:	CAR19_MOUSE
Organism:	Mus musculus
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAR19_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|62663321 - gi\|62663321\|ref\|XP_341507.2\| PREDICTED: similar to RIKEN cDNA 1110007C09 [Rattus norvegicus]	321.0	[0..1]	[183..1]
gi\|114625610 - gi\|114625610\|ref\|XP_520698.2\| PREDICTED: similar to C9orf89 protein [Pan troglodytes]	316.0	[0..1]	[183..94]
gi\|13325388, gi\|... - gi\|92087058\|ref\|NP_115686.3\| chromosome 9 open reading frame 89 [Homo sapiens], gi\|66347766\|emb\|CAI9...	314.0	[0..1]	[183..1]
gi\|109112344 - gi\|109112344\|ref\|XP_001108398.1\| PREDICTED: similar to RIKEN cDNA 1110007C09 [Macaca mulatta]	310.0	[0..1]	[183..1]
CAR19_BOVIN - Caspase recruitment domain-containing protein 19 OS=Bos taurus GN=CARD19 PE=2 SV=1	292.0	[0..1]	[183..1]
gi\|57036110 - gi\|57036110\|ref\|XP_533560.1\| PREDICTED: similar to RIKEN cDNA 1110007C09 [Canis familiaris]	274.0	[0..1]	[183..1]
gi\|50754321 - gi\|50754321\|ref\|XP_414329.1\| PREDICTED: similar to chromosome 9 open reading frame 89 [Gallus gallus...	193.0	[0..2]	[178..5]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDQTYCDRL VQDTPFLTGQ GRLSEQQVDR IILQLNRYYP QILTNKEAEK FRNPKASLRV  60
   61 RLCDLLSHLQ QRGERHCQEF YRALYIHAQP LHSHLPSRYS PQNSDCRELD WGIE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.35
Match:	1dgnA
Description:	Iceberg
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.620744119789268	bayes_pls_golite062009
protein binding	0.42685627022512	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [115-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRELSDRGPM SFLAGLGLAA GLALLLYCCP PDPKVLPGTR RVLAFSPVII DRHVSRYLLA  60
   61 FLADDLGGL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: