YRC Public Data Repository - Protein Structure Prediction

Protein:	RM53_MOUSE
Organism:	Mus musculus
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM53_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|157820947, gi... - gi\|34856289\|ref\|XP_342713.1\| PREDICTED: similar to mitochondrial ribosomal protein L53 [Rattus norve...	172.0	[0..1]	[118..1]
MRPL53 - mitochondrial ribosomal protein L53	172.0	[0..1]	[108..1]
RM53_PONPY - 39S ribosomal protein L53, mitochondrial precursor - Pongo pygmaeus (Orangutan) RM53_PONAB - 39S ribosomal protein L53, mitochondrial OS=Pongo abelii GN=MRPL53 PE=3 SV=1	172.0	[0..1]	[108..1]
gi\|55596787 - gi\|55596787\|ref\|XP_515559.1\| PREDICTED: mitochondrial ribosomal protein L53 [Pan troglodytes]	172.0	[0..1]	[108..1]
gi\|109103477 - gi\|109103477\|ref\|XP_001110017.1\| PREDICTED: similar to mitochondrial ribosomal protein L53 [Macaca m...	165.0	[0..1]	[108..1]
gi\|73980963 - gi\|73980963\|ref\|XP_855093.1\| PREDICTED: similar to mitochondrial ribosomal protein L53 [Canis famili...	164.0	[0..1]	[115..1]
RM53_BOVIN - 39S ribosomal protein L53, mitochondrial OS=Bos taurus GN=MRPL53 PE=1 SV=1	163.0	[0..1]	[107..1]
gi\|187038651, gi... - gi\|39589173\|emb\|CAE57906.1\| Hypothetical protein CBG00956 [Caenorhabditis briggsae], gi\|187038651\|em... gi\|157748945 - gi\|157748945\|ref\|XP_001678186.1\| Hypothetical protein CBG00956 [Caenorhabditis briggsae AF16]	132.0	[0..1]	[86..20]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAALARLGL RPVKLVRVQF CPFEKNVEST RTFLQTVSSE KVRATNLNCS VIADVRHDGS  60
   61 EPCVDVLFGD GYRLIMRGAH LTTQEMLSAL ASHIRDRNAA AASAPGADKV APGTSTRR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.82
Match:	1s3aA
Description:	NMR Solution Structure of Subunit B8 from Human NADH-Ubiquinone Oxidoreductase Complex I (CI-B8)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.250688176682886	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: