YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21312038, gi\|...
Organism:	Mus musculus
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21312038, gi|....

Description	E-value	Query Range	Subject Range
NSE2_RAT - E3 SUMO-protein ligase NSE2 OS=Rattus norvegicus GN=Nsmce2 PE=2 SV=1	198.0	[0..1]	[247..1]
gi\|114621637, gi... - gi\|114621643\|ref\|XP_001152705.1\| PREDICTED: similar to Non-SMC element 2 homolog (MMS21, S. cerevisi... NSMCE2 - non-SMC element 2, MMS21 homolog (S. cerevisiae)	187.0	[0..1]	[247..1]
NSE2_MOUSE - E3 SUMO-protein ligase NSE2 OS=Mus musculus GN=Nsmce2 PE=2 SV=1	177.0	[0..1]	[247..1]
NSE2_XENLA - E3 SUMO-protein ligase NSE2 OS=Xenopus laevis GN=nsmce2 PE=2 SV=1	164.0	[0..8]	[245..2]
NSE2_BOVIN - E3 SUMO-protein ligase NSE2 OS=Bos taurus GN=NSMCE2 PE=2 SV=1	159.0	[0..1]	[244..1]
PUB13_ARATH - U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1	128.0	[0..19]	[245..107]
gi\|50731976 - gi\|50731976\|ref\|XP_418440.1\| PREDICTED: similar to Non-SMC element 2 homolog (MMS21, S. cerevisiae) ...	118.0	[0..27]	[242..19]
gi\|215694441, gi... - gi\|34907856\|ref\|NP_915275.1\| putative arm repeat containing protein [Oryza sativa (japonica cultivar...	116.0	[0..20]	[243..118]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGRSSTSSG STRYISFSGI ESALSSLKNF QSCISSGMDT VSSVALGLVE TQTEVSSEYS  60
   61 MDKAMVEFAK MDRELSHYVK AVQSTINHVK EERPEKVPDL KLLVEKKFLA LQDKNSDADF 120
  121 KENEKFVQFK QQLRELKKQY GIHADRENDL TEGVD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [156-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDMIVTQSQT NFICPITQLE MKKPVKNKMC GHTYEEEAIV RMIESKHKRK KKACCPKIGC  60
   61 SHTDMRMSDL IPDEALRRAI ESHNKKKKRH SE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.522879
Match:	2yu4A
Description:	No description for 2yu4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits