YRC Public Data Repository - Protein Structure Prediction

Protein:	OCAD1_MOUSE
Organism:	Mus musculus
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OCAD1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|74146638 - gi\|74146638\|dbj\|BAE41326.1\| unnamed protein product [Mus musculus]	441.0	[0..1]	[247..1]
OCAD1_RAT - OCIA domain-containing protein 1 OS=Rattus norvegicus GN=Ociad1 PE=1 SV=1	439.0	[0..1]	[247..1]
OCAD1_PONAB - OCIA domain-containing protein 1 OS=Pongo abelii GN=OCIAD1 PE=2 SV=1 OCAD1_PONPY - OCIA domain-containing protein 1 - Pongo pygmaeus (Orangutan)	430.0	[0..1]	[247..1]
gi\|114594861, gi... - gi\|114594863\|ref\|XP_001151556.1\| PREDICTED: hypothetical protein isoform 12 [Pan troglodytes], gi\|11...	430.0	[0..1]	[247..1]
OCAD1_BOVIN - OCIA domain-containing protein 1 OS=Bos taurus GN=Ociad1 PE=2 SV=1	430.0	[0..1]	[247..1]
OCIAD1 - OCIA domain containing 1	429.0	[0..1]	[247..1]
gi\|73974988, gi\|... - gi\|73974992\|ref\|XP_859227.1\| PREDICTED: similar to OCIA domain containing 1 isoform 4 [Canis familia...	427.0	[0..1]	[247..1]
gi\|109074201, gi... - gi\|109074205\|ref\|XP_001103955.1\| PREDICTED: similar to OCIA domain containing 1 isoform 5 [Macaca mu...	420.0	[0..1]	[247..1]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGRADFREP NAQVSRPIPD IGGGYIPTEE EWRLFAECHE ECFWFRSVPL AATSMLITQG  60
   61 LISKGILSSH PKYGSIPKLL FACIVGYFAG KLSYVKTCQE KFKKLENSPL GEALRSGELR 120
  121 RSSP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	64.69897
Match:	PF07051.2
Description:	No description for PF07051.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [125-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGHYTQKPKF DSNVSGQSSF GTSPAADNIE KEALPRYEPI PFSASMNEST PTGITDHIAQ  60
   61 GPEPNLEESP KRKGVTYEEL RSKNRESYGV TLPHKTDPSV RPMQERVPKK EVKVNKYGDT 120
  121 WDE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits