YRC Public Data Repository - Protein Structure Prediction

Protein:	MSMO1_MOUSE
Organism:	Mus musculus
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSMO1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|123980314, gi... - gi\|123995123\|gb\|ABM85163.1\| sterol-C4-methyl oxidase-like [synthetic construct], gi\|123980314\|gb\|ABM... ENSPTRT00000030805 - null SC4MOL - sterol-C4-methyl oxidase-like MSMO1_PONAB - Methylsterol monooxygenase 1 OS=Pongo abelii GN=MSMO1 PE=2 SV=1 ERG25_PONPY - C-4 methylsterol oxidase - Pongo pygmaeus (Orangutan)	254.0	[0..1]	[293..1]
gi\|149642567, gi... - gi\|61871492\|ref\|XP_580615.1\| PREDICTED: similar to methyl sterol oxidase isoform 1 [Bos taurus], gi\|...	252.0	[0..1]	[293..1]
gi\|109076099, gi... - gi\|109076099\|ref\|XP_001101517.1\| PREDICTED: sterol-C4-methyl oxidase-like isoform 3 [Macaca mulatta]...	250.0	[0..1]	[293..1]
MSMO1_PIG - Methylsterol monooxygenase 1 OS=Sus scrofa GN=MSMO1 PE=2 SV=1	250.0	[0..1]	[293..1]
MSMO1_RAT - Methylsterol monooxygenase 1 OS=Rattus norvegicus GN=Msmo1 PE=2 SV=1	247.0	[0..1]	[293..1]
gi\|57096891 - gi\|57096891\|ref\|XP_532714.1\| PREDICTED: similar to C-4 methylsterol oxidase (Methylsterol monooxygen...	239.0	[0..1]	[281..1]
MSMO1_CHICK - Methylsterol monooxygenase 1 OS=Gallus gallus GN=MSMO1 PE=2 SV=1	238.0	[0..1]	[293..1]
MSMO1_MACFA - Methylsterol monooxygenase 1 OS=Macaca fascicularis GN=MSMO1 PE=2 SV=1	236.0	[0..1]	[281..1]
MSMO1_DANRE - Methylsterol monooxygenase 1 OS=Danio rerio GN=msmo1 PE=2 SV=1	231.0	[0..1]	[290..1]
gi\|111309060, gi... - gi\|118404304\|ref\|NP_001072809.1\| sterol-C4-methyl oxidase-like [Xenopus (Silurana) tropicalis], gi\|1...	222.0	[0..1]	[292..1]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNKSVGVF SSASLAVEYV DSLLPENPLQ EPFKNAWVYM LDNYTKFQIA TWGSLIVHEA  60
   61 IYFLFSLPGF LFQFIPYMRK YKIQKDKPET FEGQWKCLKK ILFNHFFIQL PLICGTYYFT 120
  121 EFFNIPYDWE RMPRWYLTLA RCLGCA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [147-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VIEDTWHYFL HRLLHHKRIY KYIHKVHHEF QAPFGIEAEY AHPLETLILG TGFFIGIVLL  60
   61 CDHVILLWAW VTIRLLETID VHSGYDIPLN PLNLVPFYTG ARHHDFHHMN FIGNYASTFT 120
  121 WWDKLFGTDA QYHAYIEKSK KLGKKSD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	34.585027
Match:	PF04116.4
Description:	No description for PF04116.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits