YRC Public Data Repository - Protein Structure Prediction

Protein:	SYF2_MOUSE
Organism:	Mus musculus
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYF2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|50759698 - gi\|50759698\|ref\|XP_417740.1\| PREDICTED: similar to GCIP-interacting protein p29 isoform 1 [Gallus ga...	362.0	[0..16]	[242..346]
gi\|76611404 - gi\|76611404\|ref\|XP_600652.2\| PREDICTED: similar to Pre-mRNA-splicing factor SYF2 (CCNDBP1-interactor...	307.0	[0..13]	[242..47]
gi\|19173786, gi\|... - gi\|19173786\|ref\|NP_596908.1\| SYF2 homolog, RNA splicing factor [Rattus norvegicus], gi\|14039808\|gb\|A...	302.0	[0..1]	[242..1]
gi\|73950598 - gi\|73950598\|ref\|XP_535357.2\| PREDICTED: similar to CCNDBP1 interactor isoform 1 [Canis familiaris]	294.0	[0..2]	[242..72]
gi\|61371056 - gi\|61371056\|gb\|AAX43601.1\| GCIP-interacting protein p29 [synthetic construct]	287.0	[0..1]	[242..1]
gi\|123979520, gi... - gi\|60654663\|gb\|AAX31896.1\| GCIP-interacting protein p29 [synthetic construct], gi\|157927960\|gb\|ABW03... SYF2 - SYF2 homolog, RNA splicing factor (S. cerevisiae)	286.0	[0..1]	[242..1]
SYF2_GECJA - Pre-mRNA-splicing factor syf2 OS=Gecko japonicus GN=syf2 PE=2 SV=1	279.0	[0..1]	[242..1]
gi\|51889790 - gi\|51889790\|gb\|AAU12852.1\| GCIP-interacting protein [Xenopus tropicalis]	273.0	[0..2]	[242..10]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVTEVVVP ADGAEARPLA AEELAAQKRE QRLRKFRELH LKRNEARKLN HQEVVEEDKR  60
   61 LKLPANWEAK KARLEWELQE EEKKKECAAR GEDYEKVKLL EISAEDAERW ERRKKKKNPD 120
  121 LGFSDYAAAQ LRQYHRLTKQ IKPDMESYER QREKHGEDFF PTSNSLLHGT HVPSSEEIDR 180
  181 MVLDLEKQIE KRDKYSRRRP YNDDADIDYI NERNAKFNKK AERFYGKYTA EIKQNLERGT 240
  241 AV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.07
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits