YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUB3_MOUSE
Organism:	Mus musculus
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUB3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|12851039 - gi\|12851039\|dbj\|BAB28928.1\| unnamed protein product [Mus musculus]	170.0	[0..1]	[104..1]
NDUB3_BOVIN - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Bos taurus GN=NDUFB3 PE=1 SV=2	168.0	[0..9]	[104..3]
NDUB3_PONPY - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Pongo pygmaeus GN=NDUFB3 PE=3 SV=3 NDUB3_PONAB - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Pongo abelii GN=NDUFB3 PE=3 SV=3	160.0	[0..13]	[104..3]
gi\|149046091, gi... - gi\|27683843\|ref\|XP_217400.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	159.0	[0..19]	[104..15]
gi\|109100553, gi... - gi\|109102863\|ref\|XP_001113376.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcom...	158.0	[0..19]	[104..13]
gi\|57110931 - gi\|57110931\|ref\|XP_536029.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	156.0	[0..18]	[104..12]
NDUFB3 - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa gi\|123981056, gi... - gi\|123995861\|gb\|ABM85532.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa [synthetic c... NDUB3_GORGO - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Gorilla gorilla gorilla GN=NDUFB3 PE=... NDUB3_PANTR - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 OS=Pan troglodytes GN=NDUFB3 PE=3 SV=3 gi\|111662139 - gi\|111662139\|gb\|ABH12212.1\| mitochondrial complex I subunit NDUFB3 [Gorilla gorilla]	153.0	[0..8]	[104..4]
gi\|114653097 - gi\|114653097\|ref\|XP_001147321.1\| PREDICTED: similar to NADH dehydrogenase [Pan troglodytes]	147.0	[0..13]	[104..3]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGHGHEHG HEHGHGHGKM ELPDYRQWKI EGTPLETVQK KLAARGLRDP WARNEAWRYM  60
   61 GGFAGNITFP SVILKGFKWG FAAFVVALGA EYFLDSQNGD KKHH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.744727
Match:	PF08122.3
Description:	No description for PF08122.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.610	N/A	N/A	a.283.1	Description not found.
View	Download	0.519	N/A	N/A	a.133.1	Phospholipase A2, PLA2
View	Download	0.515	N/A	N/A	a.133.1	Phospholipase A2, PLA2
View	Download	0.474	N/A	N/A	a.158.1	F-box domain
View	Download	0.458	N/A	N/A	a.158.1	F-box domain
View	Download	0.391	N/A	N/A	a.73.1	Retrovirus capsid protein, N-terminal core domain
View	Download	0.380	N/A	N/A	a.69.3	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
View	Download	0.359	N/A	N/A	a.136.1	Repressor of bacterial conjugation FinO
View	Download	0.353	N/A	N/A	a.149.1	RNase III endonuclease catalytic domain
View	Download	0.313	N/A	N/A	a.24.16	Nucleotidyltransferase substrate binding subunit/domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits