YRC Public Data Repository - Protein Structure Prediction

Protein:	MIP18_MOUSE
Organism:	Mus musculus
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MIP18_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114663046 - gi\|114663046\|ref\|XP_001160459.1\| PREDICTED: similar to CGI-128 protein isoform 2 [Pan troglodytes] ENSCJAT00000032289 - null	276.0	[0..7]	[163..3]
gi\|109508323, gi... - ref\|XP_214626.1\| similar to Hypothetical protein CGI-128 homolog [Rattus norvegicus], gi\|221325680\|r...	267.0	[0..11]	[163..13]
FAM96B - family with sequence similarity 96, member B	266.0	[0..11]	[163..11]
gi\|76640726 - gi\|76640726\|ref\|XP_871232.1\| PREDICTED: similar to UPF0195 protein FAM96B [Bos taurus]	265.0	[0..11]	[163..11]
gi\|73957533 - gi\|73957533\|ref\|XP_854044.1\| PREDICTED: similar to Hypothetical UPF0195 protein CGI-128 [Canis famil...	261.0	[0..11]	[163..155]
gi\|50753837 - gi\|50753837\|ref\|XP_414150.1\| PREDICTED: hypothetical protein [Gallus gallus]	259.0	[0..5]	[163..3]
gi\|49900500, gi\|... - gi\|68364030\|ref\|XP_686385.1\| PREDICTED: hypothetical protein isoform 1 [Danio rerio], gi\|50539966\|re...	256.0	[0..7]	[162..2]
gi\|147901279, gi... - gi\|56540930\|gb\|AAH87289.1\| LOC496139 protein [Xenopus laevis], gi\|147901279\|ref\|NP_001088832.1\| hypo...	254.0	[0..8]	[163..3]
gi\|57870488 - gi\|57870488\|gb\|AAH89077.1\| LOC548360 protein [Xenopus tropicalis]	254.0	[0..8]	[163..2]
gi\|47224723 - gi\|47224723\|emb\|CAG00317.1\| unnamed protein product [Tetraodon nigroviridis]	252.0	[0..7]	[162..2]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGGGGSGGG LLENANPLIY ERSGERPVTA GEEDEEVPDS IDAREIFDLI RSINDPEHPL  60
   61 TLEELNVVEQ VRIQVSDPES TVAVAFTPTI PHCSMATLIG LSIKVKLLRS LPQRFKMDVH 120
  121 ITPGTHASEH AVNKQLADKE RVAAALENTH LLEVVNQCLS ARS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.05
Match:	1uwdA
Description:	Conserved Hypothetical Protein TM0487 from Thermotoga maritima
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits