YRC Public Data Repository - Protein Structure Prediction

Protein:	ATG12_MOUSE
Organism:	Mus musculus
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG12_MOUSE.

Description	E-value	Query Range	Subject Range
ATG8_LACBI - Autophagy-related protein 8 OS=Laccaria bicolor GN=ATG8 PE=2 SV=2	167.0	[0..29]	[141..3]
ATG8_PHYIN - Autophagy-related protein 8 OS=Phytophthora infestans GN=ATG8 PE=3 SV=1	166.0	[0..29]	[141..2]
ATG8F_ARATH - Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=1 SV=1	164.0	[0..26]	[141..1]
gi\|74272675 - gi\|74272675\|gb\|ABA01133.1\| microtubule-associated protein-related protein [Chlamydomonas incerta]	163.0	[0..28]	[141..6]
gi\|92872102 - gi\|92872102\|gb\|ABE80903.1\| Light chain 3 (LC3) [Medicago truncatula]	162.0	[0..26]	[141..1]
ATG8C_ORYSJ - Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1 ATG8C_ORYSI - Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2	162.0	[0..26]	[141..1]
gi\|25989541 - gi\|25989541\|gb\|AAM77034.1\| polyprotein [Bovine viral diarrhea virus-1]	162.0	[0..31]	[141..189]

Back

Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDSEVVLQ LPSAPVGAGG ESLPELSPET ATPEPPSSAA VSPGTEEPPG DTKKKIDILL  60
   61 KAVGDTPIMK TKKWAVERTR TIQGLIDFIK KFLKLVASEQ LFIYVNQSFA PSPDQEVGTL 120
  121 YECFGSDGKL VLHYCKSQAW G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.154902
Match:	1kotA
Description:	GABA(A) receptor associated protein GABARAP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits