YRC Public Data Repository - Protein Structure Prediction

Protein:	GOSR2_MOUSE
Organism:	Mus musculus
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GOSR2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|50760647 - gi\|50760647\|ref\|XP_418096.1\| PREDICTED: similar to Wnt-9b protein precursor (Wnt-15) (Wnt-14b) [Gall...	203.0	[0..1]	[212..491]
GOSR2_RAT - Golgi SNAP receptor complex member 2 OS=Rattus norvegicus GN=Gosr2 PE=1 SV=2	185.0	[0..1]	[212..1]
gi\|73965329 - gi\|73965329\|ref\|XP_853038.1\| PREDICTED: similar to golgi SNAP receptor complex member 2 [Canis famil...	181.0	[0..1]	[212..1]
gi\|2316088 - gi\|2316088\|gb\|AAB82651.1\| golgi SNARE [Homo sapiens]	179.0	[0..1]	[212..1]
gi\|114666568 - gi\|114666568\|ref\|XP_001135292.1\| PREDICTED: golgi SNAP receptor complex member 2 isoform 5 [Pan trog...	178.0	[0..1]	[212..1]
gi\|76645276 - gi\|76645276\|ref\|XP_582615.2\| PREDICTED: similar to golgi SNAP receptor complex member 2 isoform 1 [B...	178.0	[0..1]	[212..1]
gi\|2316092 - gi\|2316092\|gb\|AAB82653.1\| golgi SNARE [Mus musculus]	178.0	[0..1]	[212..1]
gi\|182891764, gi... - gi\|41054421\|ref\|NP_955982.1\| membrin [Danio rerio], gi\|31419522\|gb\|AAH53235.1\| Golgi SNAP receptor c...	175.0	[0..1]	[212..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPLYQQTNK QVQEIQSHMG RLERADKQSV HLVENEIQAS IEQIFSHLER LEILSSKEPL  60
   61 NRRQNAKLRV DQLKYDVQHL QTALRNFQHR RQVREQQERQ RDELLSRTFT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.0
Match:	1vcsA
Description:	Solution Structure of RSGI RUH-009, an N-Terminal Domain of Vti1a [Mus musculus]
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
SNAP receptor activity	3.50393203740159	bayes_pls_golite062009
protein transporter activity	2.305772311362	bayes_pls_golite062009
binding	2.18404492932496	bayes_pls_golite062009
transporter activity	1.74189664015129	bayes_pls_golite062009
protein binding	1.63976398283458	bayes_pls_golite062009
substrate-specific transporter activity	1.49085442233849	bayes_pls_golite062009
transmembrane transporter activity	1.13101548288086	bayes_pls_golite062009
SNARE binding	0.71459772253941	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.643064875848901	bayes_pls_golite062009
phosphatidic acid binding	0.497349674588619	bayes_pls_golite062009
ion transmembrane transporter activity	0.370484918396857	bayes_pls_golite062009
phospholipid binding	0.0172309833091902	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [111-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNDSDTTIPM DESLQFNSSL HNIHHGMDDL IGGGHSILEG LRAQRLTLKG TQKKILDIAN  60
   61 MLGLSNTVMR LIEKRAFQDK YFMIGGMLLT CAVMFLVVQY LT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.30103
Match:	2npsC
Description:	No description for 2npsC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: