YRC Public Data Repository - Protein Structure Prediction

Protein:	COX16_MOUSE
Organism:	Mus musculus
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX16_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109084122 - gi\|109084122\|ref\|XP_001111003.1\| PREDICTED: synaptojanin 2 binding protein isoform 2 [Macaca mulatta...	164.0	[0..1]	[106..1]
gi\|114653714 - gi\|114653714\|ref\|XP_001145461.1\| PREDICTED: similar to HSPC203 isoform 3 [Pan troglodytes]	164.0	[0..1]	[106..1]
CN112_PONPY - COX16-like protein C14orf112 homolog, mitochondrial precursor - Pongo pygmaeus (Orangutan) COX16 - COX16 cytochrome c oxidase assembly homolog (S. cerevisiae) COX16_PONAB - Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial OS=Pongo abelii GN=COX16 PE=3 SV=...	164.0	[0..1]	[106..1]
COX16_BOVIN - Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial OS=Bos taurus GN=COX16 PE=3 SV=1	153.0	[0..1]	[106..1]
gi\|74215961 - gi\|74215961\|dbj\|BAE28631.1\| unnamed protein product [Mus musculus]	139.0	[0..24]	[106..100]
gi\|73964244 - gi\|73964244\|ref\|XP_854475.1\| PREDICTED: similar to Protein C14orf112 precursor [Canis familiaris]	136.0	[0..24]	[106..226]
COX16_NEUCR - Cytochrome c oxidase assembly protein cox16, mitochondrial OS=Neurospora crassa (strain ATCC 24698 /... COX16_NEUCR - Cytochrome c oxidase assembly protein cox-16, mitochondrial OS=Neurospora crassa GN=cox-16 PE=3 SV=1	123.0	[0..10]	[93..25]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAPAVLRAL RKNKTLRYGV PMLLLVVGGS FGLREFSQIR YDAVTIKIDP ELEKKLKVNK  60
   61 ITLESEYEKI KDSTFENWKN IRGPRPWEDP QLLQGRNPET LKPKTT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.525	a.60.4	DNA repair protein Rad51, N-terminal domain
View	Download	0.521	a.64.2	Bacteriocin AS-48
View	Download	0.451	a.112.1	Description not found.
View	Download	0.403	a.77.1	DEATH domain
View	Download	0.382	a.4.1	Homeodomain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits