YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21312084, gi\|...
Organism:	Mus musculus
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21312084, gi|....

Description	E-value	Query Range	Subject Range
TM2D3_MOUSE - TM2 domain-containing protein 3 OS=Mus musculus GN=Tm2d3 PE=2 SV=1	340.0	[0..1]	[230..1]
gi\|157820247, gi... - gi\|157820247\|ref\|NP_001099737.1\| TM2 domain containing 3 [Rattus norvegicus], gi\|149057087\|gb\|EDM084...	340.0	[0..1]	[230..1]
TM2D3 - TM2 domain containing 3	325.0	[0..1]	[230..1]
gi\|114659227 - gi\|114659227\|ref\|XP_001143945.1\| PREDICTED: similar to TM2 domain containing 3 isoform 4 [Pan troglo...	323.0	[0..1]	[230..1]
gi\|73951178 - gi\|73951178\|ref\|XP_536173.2\| PREDICTED: similar to BBP-like protein 2 isoform a [Canis familiaris]	322.0	[0..1]	[230..1]
gi\|109082559 - gi\|109082559\|ref\|XP_001086067.1\| PREDICTED: similar to BBP-like protein 2 isoform 2 isoform 3 [Macac...	321.0	[0..1]	[230..1]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAAAEPLRS VRHLSRVLLF LSQCYILSGD ENQLFSHLTE STEIPPYMTK CPSNGLCSRL  60
   61 PADCIECATN VSCTYGKPVT FDCTVKPSVT CVDQDLKPQR NFVINMTCRF CWQLPETDYE 120
  121 CSNSTTCMTV ACPRQRYFAN CTVRDHIHCL GNRTFPKLLY CNWTGGYKWS TALALSITLG 180
  181 GFGADRFYLG QWREGLGKLF SFGGLGIWTL IDVLLIGVGY VGPADGSLYI

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Detection Method:	FFAS03
Confidence:	1.03
Match:	1za3R
Description:	The crystal structure of the YSd1 Fab bound to DR5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.510723519314834	bayes_pls_golite062009
protein binding	0.218559579500833	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: