YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM16_MOUSE
Organism:	Mus musculus
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM16_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109127420 - gi\|109127420\|ref\|XP_001095765.1\| PREDICTED: mitochondria-associated protein involved in granulocyte-...	125.0	[0..2]	[125..102]
DNAJ_BACSU - Chaperone protein dnaJ OS=Bacillus subtilis GN=dnaJ PE=2 SV=2 gi\|2634992, gi\|1... - gi\|2634992\|emb\|CAB14488.1\| heat-shock protein [Bacillus subtilis subsp. subtilis str. 168], gi\|16079...	120.0	[0..54]	[124..1]
gi\|119619583, gi... - gi\|50950039\|emb\|CAH10558.1\| hypothetical protein [Homo sapiens], gi\|194328758\|ref\|NP_061072.3\| DnaJ ...	120.0	[0..24]	[119..1]
DNAJ_CARHZ - Chaperone protein DnaJ OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901...	119.0	[0..56]	[118..2]
gi\|170761912, gi... - gi\|170761912\|ref\|YP_001752491.1\| chaperone protein DnaJ [Ureaplasma parvum serovar 3 str. ATCC 27815... gi\|168307699, gi... - gi\|171902650\|gb\|EDT48939.1\| chaperone protein DnaJ [Ureaplasma parvum serovar 1 str. ATCC 27813], gi... gi\|182676091, gi... - gi\|182676091\|gb\|EDT87996.1\| chaperone protein DnaJ [Ureaplasma parvum serovar 14 str. ATCC 33697], g... DNAJ_UREPA - Chaperone protein dnaJ OS=Ureaplasma parvum GN=dnaJ PE=3 SV=1 DNAJ_UREPA - Chaperone protein DnaJ OS=Ureaplasma parvum serovar 3 (strain ATCC 700970) GN=dnaJ PE=3 SV=1 gi\|11277156 - gi\|11277156\|pir\|\|D82894 heat shock protein UU407 [imported] - Ureaplasma urealyticum	119.0	[0..54]	[123..1]
DNAJ_STAEP - (Q8CP18) Chaperone protein dnaJ (HSP40) DNAJ_STAES - Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC 12228) GN=dnaJ PE=3 SV=1	119.0	[0..54]	[122..1]
gi\|241904208, gi... - gi\|241904208\|ref\|ZP_04788914.1\| chaperone protein DnaJ [Thermoanaerobacter brockii subsp. finnii Ako... gi\|166856635, gi... - gi\|76796919\|ref\|ZP_00779267.1\| DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone Dna...	119.0	[0..54]	[121..1]
gi\|167040701, gi... - gi\|167040701\|ref\|YP_001663686.1\| chaperone protein DnaJ [Thermoanaerobacter sp. X514], gi\|166854941\|... gi\|242258002, gi... - gi\|242258002\|ref\|ZP_04802842.1\| chaperone protein DnaJ [Thermoanaerobacter sp. X513], gi\|242230472\|g...	118.0	[0..54]	[121..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKYLAQIIV MGVQVVGRAF ARALRQEFAA SQAAADARGR AGHQSAAASN LSGLSLQEAQ  60
   61 QILNVSKLSP EEVQKNYEHL FKVNDKSVGG SFYLQSKVVR AKERLDEELR IQAQEDREKG 120
  121 QKPKT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.221849
Match:	2ctwA
Description:	Solution structure of J-domain from mouse DnaJ subfamily C menber 5
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits