YRC Public Data Repository - Protein Structure Prediction

Protein:	IMP1L_MOUSE
Organism:	Mus musculus
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IMP1L_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|186684006, gi... - gi\|23125131\|ref\|ZP_00107078.1\| COG0681: Signal peptidase I [Nostoc punctiforme PCC 73102], gi\|186684...	174.0	[0..2]	[154..14]
gi\|76679600 - gi\|76679600\|ref\|XP_874453.1\| PREDICTED: similar to CG9240-PA [Bos taurus]	174.0	[0..1]	[166..1]
CCDS7874.1_1 - null gi\|109106907, gi... - gi\|109106907\|ref\|XP_001086241.1\| PREDICTED: similar to CG9240-PA isoform 2 [Macaca mulatta], gi\|1091...	174.0	[0..1]	[166..1]
gi\|57099535 - gi\|57099535\|ref\|XP_533164.1\| PREDICTED: similar to CG9240-PA isoform 1 [Canis familiaris]	173.0	[0..1]	[166..1]
IMMP1L - IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) gi\|114636800, gi... - gi\|55635719\|ref\|XP_521877.1\| PREDICTED: IMP1 inner mitochondrial membrane peptidase-like isoform 4 [...	173.0	[0..1]	[166..1]
gi\|17230467, gi\|... - gi\|17230467\|ref\|NP_487015.1\| hypothetical protein alr2975 [Nostoc sp. PCC 7120], gi\|17132069\|dbj\|BAB... gi\|25327710 - pir\|\|AH2177 hypothetical protein alr2975 [imported] - Nostoc sp. (strain PCC 7120)	173.0	[0..3]	[154..15]
gi\|149022834, gi... - gi\|149022834\|gb\|EDL79728.1\| rCG27139, isoform CRA_b [Rattus norvegicus], gi\|109470333\|ref\|XP_0010737...	173.0	[0..1]	[166..1]
gi\|74211985 - gi\|74211985\|dbj\|BAE40162.1\| unnamed protein product [Mus musculus]	172.0	[0..1]	[165..1]
gi\|83572735, gi\|... - gi\|83589821\|ref\|YP_429830.1\| signal peptidase I [Moorella thermoacetica ATCC 39073], gi\|83572735\|gb\|...	171.0	[0..8]	[155..18]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRGVLGKAF RLAGYTIQYG CIAHCAFEYV GGVVMCSGPS MEPTIQNSDI VFAENLSRHF  60
   61 YGIQRGDIVI AKSPSDPKSN ICKRVIGLEG DKILSTSPSD VFKSRSYVPT GHVWLEGDNL 120
  121 QNSTDSRYYG PIPYGLIRGR IFFKIWPFSD FGFLRDSPNG QRFSDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.39794
Match:	1t7dA
Description:	Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits