YRC Public Data Repository - Protein Structure Prediction

Protein:	RM50_MOUSE
Organism:	Mus musculus
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM50_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|18204125 - gi\|18204125\|gb\|AAH21318.1\| Mrpl50 protein [Mus musculus]	277.0	[0..1]	[159..1]
gi\|157821947, gi... - gi\|34868383\|ref\|XP_342836.1\| PREDICTED: similar to mitochondrial ribosomal protein L50 [Rattus norve...	274.0	[0..1]	[159..1]
gi\|109110757 - gi\|109110757\|ref\|XP_001111283.1\| PREDICTED: similar to mitochondrial ribosomal protein L50 [Macaca m...	249.0	[0..1]	[159..1]
gi\|73971893 - gi\|73971893\|ref\|XP_532015.2\| PREDICTED: similar to mitochondrial ribosomal protein L50 [Canis famili...	235.0	[0..1]	[159..1]
RM50_BOVIN - 39S ribosomal protein L50, mitochondrial OS=Bos taurus GN=MRPL50 PE=1 SV=1	232.0	[0..1]	[159..1]
MRPL50 - mitochondrial ribosomal protein L50	229.0	[0..1]	[159..1]
RM50_PONPY - Mitochondrial 39S ribosomal protein L50 - Pongo pygmaeus (Orangutan) RM50_PONAB - 39S ribosomal protein L50, mitochondrial OS=Pongo abelii GN=MRPL50 PE=2 SV=1	226.0	[0..1]	[159..1]
gi\|114625922 - gi\|114625922\|ref\|XP_520157.2\| PREDICTED: mitochondrial ribosomal protein L50 [Pan troglodytes]	225.0	[0..1]	[159..1]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALIVSRLA RRGWLWKLPL ATRREFWSRS RKEKEPVVAE TVEEVKKEPV LVCPPLRSRA  60
   61 YTPPSDLQSR LESHIKEVLG SSLPNNWQDI SLDDGHMKFR LLAGLADGLG HAVPNSRLHQ 120
  121 MCRVRDVLDF YNVPVQDKSK FDELVASNLP PNLKISWSY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.11
Match:	1vkuA
Description:	Crystal structure of Acyl carrier protein (TM0175) from Thermotoga maritima at 2.00 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	0.340809137326983	bayes_pls_golite062009
binding	0.0138468891652167	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: