YRC Public Data Repository - Protein Structure Prediction

Protein:	POMP_MOUSE
Organism:	Mus musculus
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POMP_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|10834776 - gi\|10834776\|gb\|AAG23819.1\|AF275807_1 PNAS-110 [Homo sapiens]	219.0	[0..1]	[139..1]
gi\|27691986, gi\|... - gi\|27691986\|ref\|XP_213700.1\| PREDICTED: similar to Pomp CG9324-PA [Rattus norvegicus], gi\|171847036\|...	215.0	[0..1]	[141..1]
POMP_BOVIN - Proteasome maturation protein OS=Bos taurus GN=POMP PE=2 SV=1	215.0	[0..1]	[141..1]
gi\|12849209 - gi\|12849209\|dbj\|BAB28250.1\| unnamed protein product [Mus musculus]	212.0	[0..1]	[141..1]
gi\|57104896 - gi\|57104896\|ref\|XP_534518.1\| PREDICTED: similar to CG9324-PA [Canis familiaris]	210.0	[0..1]	[141..1]
gi\|148230499, gi... - gi\|46329467\|gb\|AAH68691.1\| MGC81104 protein [Xenopus laevis], gi\|148230499\|ref\|NP_001084753.1\| hypot...	196.0	[0..1]	[141..1]
gi\|89270412 - gi\|89270412\|emb\|CAJ81620.1\| Proteasome maturation factor UMP1 family member [Xenopus tropicalis]	194.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNARGLGSEL KDSIPVAELS ASGPFESHDL LRKGFSCVKN ELLPSHPLEL SEKNFQLNQD  60
   61 KMNFSTLRNI QGLFAPLKLQ MEFKAVQQVH RLPFLPSSNL SLDILRGNDE TIGFEDILND 120
  121 PSQSELMGEP HVMVEHKLGL L

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	72.387216
Match:	PF05348.2
Description:	No description for PF05348.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits