YRC Public Data Repository - Protein Structure Prediction

Protein:	DNLZ_MOUSE
Organism:	Mus musculus
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DNLZ_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109469628, gi... - gi\|34853079\|ref\|XP_216011.2\| PREDICTED: similar to CG12379-PA [Rattus norvegicus], gi\|109469628\|ref\|...	307.0	[0..1]	[177..51]
DNLZ - DNL-type zinc finger	269.0	[0..1]	[177..1]
gi\|114627557 - gi\|114627557\|ref\|XP_520365.2\| PREDICTED: similar to OTTHUMP00000022587 [Pan troglodytes]	267.0	[0..1]	[177..1]
gi\|109109820 - gi\|109109820\|ref\|XP_001117966.1\| PREDICTED: similar to CG12379-PA [Macaca mulatta]	260.0	[0..1]	[177..1]
gi\|76676986 - gi\|76676986\|ref\|XP_591925.2\| PREDICTED: similar to CG12379-PA [Bos taurus]	221.0	[0..1]	[177..46]
gi\|73967558 - gi\|73967558\|ref\|XP_849286.1\| PREDICTED: similar to CG12379-PA [Canis familiaris]	208.0	[0..1]	[177..1]
gi\|116126281, gi... - gi\|118786355\|ref\|XP_315385.3\| ENSANGP00000021116 [Anopheles gambiae str. PEST], gi\|116126281\|gb\|EAA1...	182.0	[0..31]	[138..23]
gi\|47219865 - gi\|47219865\|emb\|CAF97135.1\| unnamed protein product [Tetraodon nigroviridis]	163.0	[0..65]	[154..1]
DNLZ_XENLA - DNL-type zinc finger protein OS=Xenopus laevis GN=dnlz PE=2 SV=1	156.0	[0..72]	[166..81]
gi\|42415411 - gi\|42415411\|gb\|AAS15675.1\| LP13032p [Drosophila melanogaster]	156.0	[0..64]	[154..89]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRTALSRMP TLLRSVRTRD SGPRRLWDLG ARLKTAERLR GWAWGWASGW RSSSSAPGSG  60
   61 RAAALGRVEA DHYQLVYTCK VCGTRSSKRI SKLAYHQGVV IVTCPGCQNH HIIADNLSWF 120
  121 SDLKGKRNIE EILAARGEEV RRVSGDGALE LILEAAVPPD TPEGDEDPPN PGKMGQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	2e2zA
Description:	No description for 2e2zA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits