YRC Public Data Repository - Protein Structure Prediction

Protein:	RS21_MOUSE
Organism:	Mus musculus
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS21_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|50758757 - gi\|50758757\|ref\|XP_417405.1\| PREDICTED: similar to ribosomal protein S21; 40S ribosomal protein S21 ...	166.0	[0..1]	[83..79]
gi\|73992422 - gi\|73992422\|ref\|XP_543084.2\| PREDICTED: similar to ribosomal protein S21 isoform 1 [Canis familiaris... RS21_BOVIN - 40S ribosomal protein S21 OS=Bos taurus GN=RPS21 PE=3 SV=1 RPS21 - ribosomal protein S21 gi\|114685480, gi... - gi\|114685480\|ref\|XP_514766.2\| PREDICTED: similar to ribosomal protein S21 isoform 3 [Pan troglodytes... ENSCJAT00000027617 - null RS21_PIG - 40S ribosomal protein S21 OS=Sus scrofa GN=RPS21 PE=1 SV=1	157.0	[0..1]	[83..1]
gi\|109091379 - gi\|109091379\|ref\|XP_001088137.1\| PREDICTED: similar to ribosomal protein S21 [Macaca mulatta]	156.0	[0..1]	[83..1]
RS21_RAT - 40S ribosomal protein S21 OS=Rattus norvegicus GN=Rps21 PE=1 SV=1	154.0	[0..1]	[83..1]
gi\|61369987 - gi\|61369987\|gb\|AAX43423.1\| ribosomal protein S21 [synthetic construct]	154.0	[0..1]	[81..1]
RS21_XENLA - 40S ribosomal protein S21 OS=Xenopus laevis GN=rps21 PE=3 SV=1	154.0	[0..1]	[83..1]
gi\|73992252 - gi\|73992252\|ref\|XP_852526.1\| PREDICTED: similar to ribosomal protein S21 [Canis familiaris]	153.0	[0..1]	[83..33]
gi\|91093173 - gi\|91093173\|ref\|XP_967937.1\| PREDICTED: similar to ribosomal protein S21e [Tribolium castaneum]	152.0	[0..1]	[83..1]
RS21_KLULA - 40S ribosomal protein S21 OS=Kluyveromyces lactis GN=RPS21 PE=3 SV=1 RS21_KLULA - 40S ribosomal protein S21 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 12...	152.0	[0..1]	[83..1]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNDAGEFVD LYVPRKCSAS NRIIAAKDHA SIQMNVAEVD RTTGRFNGQF KTYGICGAIR  60
   61 RMGESDDSIL RLAKADGIVS KNF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.721246
Match:	PF01249.9
Description:	No description for PF01249.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.569	N/A	N/A	c.30.1	PreATP-grasp domain
View	Download	0.554	N/A	N/A	c.30.1	PreATP-grasp domain
View	Download	0.551	N/A	N/A	d.19.1	MHC antigen-recognition domain
View	Download	0.457	N/A	N/A	d.51.1	Eukaryotic type KH-domain (KH-domain type I)
View	Download	0.428	N/A	N/A	b.61.8	Description not found.
View	Download	0.417	N/A	N/A	c.5.1	MurCD N-terminal domain
View	Download	0.411	N/A	N/A	c.5.1	MurCD N-terminal domain
View	Download	0.381	N/A	N/A	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.369	N/A	N/A	c.47.1	Thioredoxin-like
View	Download	0.355	N/A	N/A	d.58.4	Dimeric alpha+beta barrel

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits