YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30705060, gi\|...
Organism:	Mus musculus
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30705060, gi|....

Description	E-value	Query Range	Subject Range
gi\|62661551, gi\|... - gi\|62661551\|ref\|XP_214202.3\| PREDICTED: similar to M142.8 [Rattus norvegicus], gi\|109502519\|ref\|XP_0...	376.0	[0..1]	[223..1]
N6MT2_MOUSE - Protein-lysine N-methyltransferase N6amt2 OS=Mus musculus GN=N6amt2 PE=1 SV=1	354.0	[0..11]	[224..1]
N6AMT2 - N-6 adenine-specific DNA methyltransferase 2 (putative)	351.0	[0..11]	[222..1]
gi\|55639523, gi\|... - gi\|55639523\|ref\|XP_509564.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi\|1146489...	349.0	[0..11]	[222..1]
gi\|109120146 - gi\|109120146\|ref\|XP_001085919.1\| PREDICTED: similar to M142.8 [Macaca mulatta]	347.0	[0..11]	[222..1]
gi\|57105038 - gi\|57105038\|ref\|XP_543173.1\| PREDICTED: similar to M142.8 [Canis familiaris]	336.0	[0..11]	[223..1]
N6MT2_BOVIN - Protein-lysine N-methyltransferase N6AMT2 OS=Bos taurus GN=N6AMT2 PE=2 SV=1	320.0	[0..11]	[222..1]
N6MT2_CHICK - Protein-lysine N-methyltransferase N6AMT2 OS=Gallus gallus GN=N6AMT2 PE=2 SV=1	310.0	[0..19]	[221..8]
N6MT2_XENLA - Protein-lysine N-methyltransferase n6amt2 OS=Xenopus laevis GN=n6amt2 PE=2 SV=1	300.0	[0..11]	[221..1]
CE37540 - status:Confirmed UniProt:Q5WRN3 protein_id:CAH60777.1	278.0	[0..11]	[222..1]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQWSQTLCE MSESEDDDIP QLSSHTLAAL QEFYAEQKQS VNPRGDDKYN VGVIEENWQL  60
   61 SQFWYSQDTA LRLAREAIDA AGEGGRIACV SAPSVYQKLR ELCREDSSVY IFEYDRRFAI 120
  121 YGDEFIFYDY NHPLELPERI AAHSFDLVVA DPPYLSEECL RKTSETIQFL TRGKILLCTG 180
  181 AIMEEQAAQL LGVKMCKFIP EHSRNLANEF RCYTNYDSGL DCEA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits