YRC Public Data Repository - Protein Structure Prediction

Protein:	RT12_MOUSE
Organism:	Mus musculus
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT12_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|149056449, gi... - gi\|27730973\|ref\|XP_214890.1\| PREDICTED: similar to 28S ribosomal protein S12, mitochondrial precurso...	197.0	[0..1]	[139..1]
gi\|109124637, gi... - gi\|109124641\|ref\|XP_001086380.1\| PREDICTED: similar to mitochondrial ribosomal protein S12 precursor...	187.0	[0..1]	[139..1]
MRPS12 - mitochondrial ribosomal protein S12	187.0	[0..1]	[138..1]
sp\|O15235\|RT12_H... - 28S ribosomal protein S12, mitochondrial OS=Homo sapiens GN=MRPS12 PE=1 SV=1 VAR_051820, 28S ribosom... gi\|114677135, gi... - gi\|55649195\|ref\|XP_524259.1\| PREDICTED: mitochondrial ribosomal protein S12 isoform 4 [Pan troglodyt...	183.0	[0..1]	[138..1]
gi\|92910094, gi\|... - gi\|92910094\|ref\|ZP_01278870.1\| Ribosomal protein S12 [Mycobacterium sp. JLS], gi\|92432182\|gb\|EAS9151... gi\|92438565, gi\|... - gi\|92917301\|ref\|ZP_01285915.1\| Ribosomal protein S12 [Mycobacterium sp. KMS], gi\|92438565\|gb\|EAS9641...	183.0	[0..27]	[139..132]
RS12_CHLTE - 30S ribosomal protein S12 OS=Chlorobium tepidum GN=rpsL PE=3 SV=1 RS12_CHLTE - 30S ribosomal protein S12 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) ...	180.0	[0..30]	[139..1]
gi\|94451068, gi\|... - gi\|94502378\|ref\|ZP_01308840.1\| ribosomal protein S12 [Candidatus Sulcia muelleri str. Hc (Homalodisc... RS12_SULMW - 30S ribosomal protein S12 OS=Sulcia muelleri (strain GWSS) GN=rpsL PE=3 SV=1	180.0	[0..30]	[139..1]
gi\|108797957, gi... - gi\|108797957\|ref\|YP_638154.1\| ribosomal protein S12 [Mycobacterium sp. MCS], gi\|108768376\|gb\|ABG0709...	180.0	[0..27]	[139..95]
gi\|71730663, gi\|... - gi\|71899534\|ref\|ZP_00681690.1\| Ribosomal protein S12, bacterial and chloroplast form [Xylella fastid...	180.0	[0..19]	[139..30]
gi\|89359806, gi\|... - gi\|89359806\|ref\|ZP_01197626.1\| Ribosomal protein S12, bacterial and chloroplast form [Xanthobacter a...	180.0	[0..26]	[139..11]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWPGLLYGL TTSLSRGLAL APQLWAARSM ATLNQMHRLG PRKEPPKRLG PTEGRPQLKG  60
   61 VVLRTFIRKP KKPNSANRKC CRVRLSTGKE AVCFIPGEGH TLQEHHVVLV EGGRTQDLPG 120
  121 VKLKVVRGKY DCGHVQKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.39794
Match:	2f4vL
Description:	No description for 2f4vL was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits