YRC Public Data Repository - Protein Structure Prediction

Protein:	C1QBP_MOUSE
Organism:	Mus musculus
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C1QBP_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|126540523, gi... - gi\|56237886\|emb\|CAI26064.1\| complement component 1, q subcomponent binding protein [Mus musculus], g...	389.0	[0..1]	[278..1]
C1QBP_RAT - Complement component 1 Q subcomponent-binding protein, mitochondrial OS=Rattus norvegicus GN=C1qbp P...	383.0	[0..1]	[278..1]
gi\|109112933 - gi\|109112933\|ref\|XP_001100940.1\| PREDICTED: similar to complement component 1, q subcomponent bindin...	364.0	[0..1]	[278..1]
gi\|54696656, gi\|... - gi\|61368789\|gb\|AAX43237.1\| complement component 1 q subcomponent binding protein [synthetic construc...	351.0	[0..1]	[278..1]
gi\|61358698, gi\|... - gi\|61358698\|gb\|AAX41609.1\| complement component 1 q subcomponent binding protein [synthetic construc... C1QBP - complement component 1, q subcomponent binding protein	351.0	[0..1]	[278..1]
gi\|15080897, gi\|... - gi\|15080899\|gb\|AAK83695.1\|AF283279_1 globular head receptor of C1 complement protein [Cercopithecus ...	351.0	[0..1]	[278..1]
gi\|114665950, gi... - gi\|114665952\|ref\|XP_511993.2\| PREDICTED: complement component 1, q subcomponent binding protein isof...	350.0	[0..1]	[278..1]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPLLRCVPR SLGAASGLRT AIPAQPLRHL LQPAPRPCLR PFGLLSVRAG SARRSGLLQP  60
   61 PVPCACGCGA LHTEGDKAFV EFLTDEIKEE KKIQKHKSLP KMSGDWELEV NGTEAKLLRK 120
  121 VAGEKITVTF NINNSIPPTF DGEEEPSQGQ KAEEQEPERT STPNFVVEVT KTDGKKTLVL 180
  181 DCHYPEDEIG HEDEAESDIF SIKEVSFQAT GDSEWRDTNY TLNTDSLDWA LYDHLMDFLA 240
  241 DRGVDNTFAD ELVELSTALE HQEYITFLED LKSFVKNQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.69897
Match:	1p32A
Description:	Acidic mitochondrial matrix protein p32
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.14402816172244	bayes_pls_golite062009
opsonin binding	0.84592190994393	bayes_pls_golite062009
complement binding	0.57175724197635	bayes_pls_golite062009
protein binding	0.504674818832231	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: