YRC Public Data Repository - Protein Structure Prediction

Protein:	TM14C_MOUSE
Organism:	Mus musculus
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TM14C_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|57110218 - gi\|57110218\|ref\|XP_535885.1\| PREDICTED: similar to transmembrane protein 14C [Canis familiaris]	117.0	[0..1]	[113..1]
gi\|50744874 - gi\|50744874\|ref\|XP_419915.1\| PREDICTED: similar to RIKEN cDNA 5730496E24 [Gallus gallus]	115.0	[0..9]	[109..198]
TM14C_RAT - Transmembrane protein 14C OS=Rattus norvegicus GN=Tmem14c PE=3 SV=1	110.0	[0..1]	[102..1]
gi\|114605447, gi... - gi\|114605451\|ref\|XP_001167368.1\| PREDICTED: transmembrane protein 14C isoform 4 [Pan troglodytes], g... TMEM14C - transmembrane protein 14C gi\|123983879, gi... - gi\|123998203\|gb\|ABM86703.1\| transmembrane protein 14C [synthetic construct], gi\|123983879\|gb\|ABM8348...	110.0	[0..3]	[113..2]
TM14C_PONAB - Transmembrane protein 14C OS=Pongo abelii GN=TMEM14C PE=3 SV=1 gi\|55731390 - gi\|55731390\|emb\|CAH92409.1\| hypothetical protein [Pongo abelii]	110.0	[0..3]	[113..2]
gi\|109069605, gi... - gi\|109069605\|ref\|XP_001087822.1\| PREDICTED: transmembrane protein 14C isoform 2 [Macaca mulatta], gi...	108.0	[0..4]	[113..3]
gi\|148709019, gi... - gi\|26354150\|dbj\|BAC40705.1\| unnamed protein product [Mus musculus], gi\|148709019\|gb\|EDL40965.1\| tran...	103.0	[0..9]	[114..1]
FAX1_ARATH - Protein FATTY ACID EXPORT 1, chloroplastic OS=Arabidopsis thaliana GN=FAX1 PE=2 SV=1	102.0	[0..14]	[114..105]
TM14C_BOVIN - Transmembrane protein 14C OS=Bos taurus GN=TMEM14C PE=1 SV=1	102.0	[0..1]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKDSGPLMP LHYFGFGYAA LVATGGIIGY AKAGSVPSLA AGLFFGGLAG LGAYQLSQDP  60
   61 RNVWVFLATS GTLAGIMGMR FYNSGKFMPA GLIAGASLLM VAKVGISLLS SPHP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.455932
Match:	PF03647.4
Description:	No description for PF03647.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits